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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030087 through 18771 annotations produced 1 hits



chrX:8987638-8997752 (-) // 100.0 // ():

Annotation Number : CG7766
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1641396_a_at
Accessions : protein= , nucleotide= NP_001138179; /// NP_001138180; /// NP_001138181; /// NP_572525; /// NP_788889;
Pathway : 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0005976 // polysaccharide metabolic
Interpro : 0005886 // plasma membrane // inferred from electronic annotation /// 0005964 // phosphorylase kinase complex // inferre
FlyMine data for full length.
Homophila reports that CG7766 is a close match (5e-126) to human gene PHKB (NP_001027005), a gene associated with Phosphorylase kinase deficiency of liver and muscle, autosomal recessive, 261750 (3).


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain721 ± 164 of 4 1.40Up
Head624 ± 244 of 4 1.20Up
Eye599 ± 174 of 4 1.17Up
Thoracicoabdominal ganglion989 ± 154 of 4 1.90Up
Salivary gland1255 ± 204 of 4 2.45Up
Crop762 ± 104 of 4 1.50Up
Midgut305 ± 54 of 4 0.60Down
Tubule359 ± 114 of 4 0.70Down
Hindgut802 ± 154 of 4 1.60Up
Heart863 ± 204 of 4 1.69Up
Fat body1181 ± 1244 of 4 2.31Up
Ovary539 ± 44 of 4 1.10None
Testis73 ± 54 of 4 0.10Down
Male accessory glands429 ± 234 of 4 0.80Down
Virgin spermatheca1254 ± 434 of 4 2.45Up
Mated spermatheca815 ± 404 of 4 1.59Up
Adult carcass1449 ± 164 of 4 2.80Up
Larval CNS560 ± 404 of 4 1.10None
Larval Salivary gland400 ± 54 of 4 0.78Down
Larval midgut312 ± 144 of 4 0.61Down
Larval tubule180 ± 14 of 4 0.40Down
Larval hindgut419 ± 174 of 4 0.82Down
Larval fat body361 ± 204 of 4 0.70Down
Larval trachea386 ± 254 of 4 0.76Down
Larval carcass1087 ± 994 of 4 2.13Up
S2 cells (growing)377 ± 64 of 4 0.74Down
Whole fly511 ± 134 of 4

Looking for FBgn0030087. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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