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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030093 through 18771 annotations produced 1 hits



Brahma associated protein 111kD (dalao):

Annotation Number : CG7055
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030093
Gbrowse : chrX:9043357-9046011 (+) // 100.0 //
Probeset : 1631677_at
Accessions : protein= NP_572530;, nucleotide= NM_132302;
Pathway : DNA-dependent // inferred from direct assay"
Interpro : 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 00165
FlyMine data for FBgn0030093.
BDGP gene expression has embryonic in situ data for dalao: 15 pix of staining in 15 body parts.
BioGrid reports that CG7055 interacts with CG5942 CG18740 CG5942 .
TRiP has 2 RNAi stocks for FBgn0030093 available for purchase.
VDRC has 3 RNAi stocks for FBgn0030093 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain244 ± 104 of 4 0.80Down
Head164 ± 34 of 4 0.50Down
Eye123 ± 64 of 4 0.39Down
Thoracicoabdominal ganglion222 ± 54 of 4 0.70Down
Salivary gland129 ± 54 of 4 0.40Down
Crop107 ± 04 of 4 0.30Down
Midgut91 ± 54 of 4 0.30Down
Tubule92 ± 24 of 4 0.30Down
Hindgut129 ± 44 of 4 0.40Down
Heart141 ± 34 of 4 0.44Down
Fat body124 ± 164 of 4 0.39Down
Ovary630 ± 44 of 4 2.00Up
Testis355 ± 144 of 4 1.10None
Male accessory glands309 ± 34 of 4 1.00None
Virgin spermatheca124 ± 84 of 4 0.39Down
Mated spermatheca122 ± 94 of 4 0.38Down
Adult carcass130 ± 64 of 4 0.40Down
Larval CNS688 ± 304 of 4 2.15Up
Larval Salivary gland362 ± 214 of 4 1.13None
Larval midgut153 ± 54 of 4 0.48Down
Larval tubule113 ± 64 of 4 0.40Down
Larval hindgut241 ± 74 of 4 0.75Down
Larval fat body144 ± 44 of 4 0.50Down
Larval trachea409 ± 254 of 4 1.28Up
Larval carcass221 ± 114 of 4 0.69Down
S2 cells (growing)478 ± 184 of 4 1.49Up
Whole fly320 ± 194 of 4

Looking for FBgn0030093. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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