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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030097 through 18771 annotations produced 1 hits



(CG12115):

Annotation Number : CG12115
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030097
Gbrowse : chrX:9083355-9084614 (-) // 100.0 //
Probeset : 1626342_at
Accessions : protein= NP_572533;, nucleotide= NM_132305;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0030097.
BDGP gene expression has embryonic in situ data for CG12115: 4 pix of staining in 1 body parts.
BioGrid reports that CG12115 interacts with CG15185 .
VDRC has 2 RNAi stocks for FBgn0030097 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 10 of 4 0.90None
Head5 10 of 4 1.40None
Eye2 10 of 4 0.48None
Thoracicoabdominal ganglion3 10 of 4 0.90None
Salivary gland10 30 of 4 2.37None
Crop2 00 of 4 0.50None
Midgut14 50 of 4 3.40None
Tubule10 00 of 4 2.40Up
Hindgut9 00 of 4 2.20None
Heart0 00 of 4 0.21None
Fat body6 30 of 4 1.53None
Ovary5 00 of 4 1.20None
Testis3 10 of 4 0.90None
Male accessory glands12 52 of 4 2.90None
Virgin spermatheca8 20 of 4 2.08None
Mated spermatheca12 30 of 4 2.89None
Adult carcass7 00 of 4 1.70None
Larval CNS8 13 of 4 1.90None
Larval Salivary gland10 10 of 4 2.54Up
Larval midgut3050 1164 of 4722.04Up
Larval tubule9 00 of 4 2.20None
Larval hindgut8 01 of 4 2.03None
Larval fat body29 113 of 4 6.90None
Larval trachea15 251 of 4 3.57None
Larval carcass13 22 of 4 3.18Up
S2 cells (growing)6 10 of 4 1.53None
Whole fly4 10 of 4

Looking for FBgn0030097. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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