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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030101 through 18771 annotations produced 1 hits



(CG12118):

Annotation Number : CG12118
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030101
Gbrowse : chrX:9088774-9090494 (-) // 100.0 //
Probeset : 1631351_s_at
Accessions : protein= NP_572537; /// NP_788893;, nucleotide= NM_132309; /// NM_176720;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0030101.
BDGP gene expression has embryonic in situ data for CG12118: 4 pix of staining in 1 body parts.
VDRC has 3 RNAi stocks for FBgn0030101 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain163 ± 54 of 4 0.60Down
Head190 ± 44 of 4 0.70None
Eye214 ± 94 of 4 0.81None
Thoracicoabdominal ganglion218 ± 124 of 4 0.80None
Salivary gland242 ± 134 of 4 0.91None
Crop240 ± 84 of 4 0.90None
Midgut135 ± 54 of 4 0.50Down
Tubule187 ± 104 of 4 0.70Down
Hindgut174 ± 34 of 4 0.70Down
Heart232 ± 124 of 4 0.87None
Fat body137 ± 154 of 4 0.51Down
Ovary173 ± 44 of 4 0.70Down
Testis944 ± 134 of 4 3.50Up
Male accessory glands144 ± 54 of 4 0.50Down
Virgin spermatheca268 ± 84 of 4 1.01None
Mated spermatheca270 ± 94 of 4 1.02None
Adult carcass405 ± 284 of 4 1.50Up
Larval CNS92 ± 54 of 4 0.35Down
Larval Salivary gland111 ± 54 of 4 0.42Down
Larval midgut99 ± 44 of 4 0.37Down
Larval tubule214 ± 64 of 4 0.80None
Larval hindgut139 ± 124 of 4 0.52Down
Larval fat body270 ± 384 of 4 1.00None
Larval trachea110 ± 184 of 4 0.42Down
Larval carcass180 ± 184 of 4 0.68Down
S2 cells (growing)76 ± 14 of 4 0.29Down
Whole fly266 ± 254 of 4

Looking for FBgn0030101. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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