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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0030107 through 18771 annotations produced 1 hits


Annotation Number : CG15370
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030107
Gbrowse : chrX:9119488-9120601 (+) // 100.0 //
Probeset : 1628095_at
Accessions : protein= NP_572544;, nucleotide= NM_132316;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0030107.
BioGrid reports that CG15370 interacts with CG17666 CG33115 CG7447 CG8965 CG17956 CG18734 CG3081 CG31626 CG5078 CG5089 CG7641 CG9224 CG9975 .
VDRC has 1 RNAi stocks for FBgn0030107 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 00 of 4 0.30None
Head9 30 of 4 1.20None
Eye6 10 of 4 0.87None
Thoracicoabdominal ganglion7 10 of 4 0.90None
Salivary gland25 70 of 4 3.37None
Crop6 20 of 4 0.80None
Midgut9 20 of 4 1.20None
Tubule3 00 of 4 0.40Down
Hindgut3 10 of 4 0.40None
Heart2 00 of 4 0.36None
Fat body11 50 of 4 1.54None
Ovary2 00 of 4 0.30None
Testis2 10 of 4 0.40None
Male accessory glands3 00 of 4 0.50None
Virgin spermatheca3 10 of 4 0.49None
Mated spermatheca4 10 of 4 0.64None
Adult carcass7 30 of 4 1.00None
Larval CNS5 10 of 4 0.66None
Larval Salivary gland2 00 of 4 0.30None
Larval midgut4 10 of 4 0.54None
Larval tubule4 10 of 4 0.60None
Larval hindgut8 30 of 4 1.08None
Larval fat body9 30 of 4 1.30None
Larval trachea1 00 of 4 0.17None
Larval carcass10 20 of 4 1.38None
S2 cells (growing)6 00 of 4 0.88None
Whole fly7 20 of 4

Looking for FBgn0030107. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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