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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030109 through 18771 annotations produced 1 hits



(CG12121):

Annotation Number : CG12121
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030109
Gbrowse : chrX:9122819-9126406 (-) // 100.0 //
Probeset : 1632894_at
Accessions : protein= NP_572545;, nucleotide= NM_132317;
Pathway : 0016021 // integral to membrane // inferred from electronic annotation
FlyMine data for FBgn0030109.
VDRC has 1 RNAi stocks for FBgn0030109 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain313 ± 44 of 4 1.40Up
Head257 ± 184 of 4 1.10None
Eye276 ± 14 of 4 1.20Up
Thoracicoabdominal ganglion359 ± 144 of 4 1.60Up
Salivary gland436 ± 124 of 4 1.89Up
Crop170 ± 64 of 4 0.70Down
Midgut183 ± 124 of 4 0.80Down
Tubule267 ± 154 of 4 1.20Up
Hindgut247 ± 214 of 4 1.10None
Heart211 ± 84 of 4 0.91None
Fat body251 ± 64 of 4 1.09None
Ovary370 ± 64 of 4 1.60Up
Testis214 ± 54 of 4 0.90None
Male accessory glands1882 ± 574 of 4 8.10Up
Virgin spermatheca313 ± 84 of 4 1.36Up
Mated spermatheca333 ± 134 of 4 1.44Up
Adult carcass214 ± 84 of 4 0.90None
Larval CNS321 ± 134 of 4 1.39Up
Larval Salivary gland515 ± 224 of 4 2.23Up
Larval midgut152 ± 94 of 4 0.66Down
Larval tubule361 ± 84 of 4 1.60Up
Larval hindgut280 ± 44 of 4 1.21Up
Larval fat body219 ± 64 of 4 0.90None
Larval trachea261 ± 214 of 4 1.13None
Larval carcass192 ± 144 of 4 0.83None
S2 cells (growing)514 ± 44 of 4 2.22Up
Whole fly231 ± 124 of 4

Looking for FBgn0030109. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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