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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030116 through 18771 annotations produced 1 hits



():

Annotation Number : CG17438
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID :
Gbrowse : chrX:9153317-9154436 (-) // 100.0 //
Probeset : 1627731_at
Accessions : protein= , nucleotide=


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 0.00Down
Head0 ± 00 of 4 0.10Down
Eye1 ± 10 of 4 0.16Down
Thoracicoabdominal ganglion0 ± 00 of 4 0.00Down
Salivary gland4 ± 20 of 4 0.42None
Crop0 ± 00 of 4 0.00Down
Midgut0 ± 00 of 4 0.10Down
Tubule1 ± 00 of 4 0.10Down
Hindgut0 ± 00 of 4 0.10Down
Heart0 ± 00 of 4 0.06Down
Fat body0 ± 00 of 4 0.06Down
Ovary0 ± 00 of 4 0.00Down
Testis141 ± 64 of 414.40Up
Male accessory glands1 ± 00 of 4 0.10Down
Virgin spermatheca0 ± 00 of 4 0.05Down
Mated spermatheca0 ± 00 of 4 0.07Down
Adult carcass2 ± 00 of 4 0.20Down
Larval CNS0 ± 00 of 4 0.06Down
Larval Salivary gland0 ± 00 of 4 0.07Down
Larval midgut0 ± 00 of 4 0.08Down
Larval tubule1 ± 00 of 4 0.10Down
Larval hindgut0 ± 00 of 4 0.06Down
Larval fat body24 ± 151 of 4 2.50None
Larval trachea0 ± 00 of 4 0.07Down
Larval carcass0 ± 00 of 4 0.05Down
S2 cells (growing)0 ± 00 of 4 0.04Down
Whole fly9 ± 11 of 4

Looking for FBgn0030116. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime