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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030117 through 18771 annotations produced 2 hits



ric8a (ric8a):

Annotation Number : CG15910
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028292 /// FBgn0030117
Gbrowse : chrX:9154510-9155365 (+) // 100.0 // /// chrX:9151027-9151658 (+) // 80.89 //
Probeset : 1629865_s_at
Accessions : protein= NP_572550;, nucleotide= NM_132322;
Pathway : 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0
Interpro : 0001965 // G-protein alpha-subunit binding // inferred from physical interaction /// 0005085 // guanyl-nucleotide exchan
FlyMine data for FBgn0028292 /// FBgn0030117.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain28 ± 14 of 4 0.60Down
Head29 ± 34 of 4 0.60Down
Eye16 ± 14 of 4 0.34Down
Thoracicoabdominal ganglion21 ± 24 of 4 0.40Down
Salivary gland28 ± 43 of 4 0.59Down
Crop28 ± 34 of 4 0.60Down
Midgut46 ± 34 of 4 1.00None
Tubule24 ± 14 of 4 0.50Down
Hindgut36 ± 24 of 4 0.80None
Heart13 ± 14 of 4 0.28Down
Fat body31 ± 44 of 4 0.65Down
Ovary75 ± 14 of 4 1.60Up
Testis28 ± 14 of 4 0.60Down
Male accessory glands34 ± 33 of 4 0.70None
Virgin spermatheca13 ± 14 of 4 0.28Down
Mated spermatheca16 ± 24 of 4 0.34Down
Adult carcass33 ± 24 of 4 0.70None
Larval CNS34 ± 14 of 4 0.71None
Larval Salivary gland39 ± 34 of 4 0.81None
Larval midgut32 ± 14 of 4 0.67Down
Larval tubule42 ± 14 of 4 0.90None
Larval hindgut35 ± 44 of 4 0.73None
Larval fat body35 ± 24 of 4 0.70None
Larval trachea20 ± 34 of 4 0.43Down
Larval carcass31 ± 24 of 4 0.65Down
S2 cells (growing)76 ± 14 of 4 1.59Up
Whole fly48 ± 54 of 4



():

Annotation Number : CG15910
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030117
Gbrowse : chrX:9154510-9155365 (+) // 100.0 // /// chrX:9151027-9151658 (+) // 80.89 //
Probeset : 1641034_at
Accessions : protein= NP_572550;, nucleotide= NM_132322;
Pathway : 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0
Interpro : 0001965 // G-protein alpha-subunit binding // inferred from physical interaction /// 0005085 // guanyl-nucleotide exchan
FlyMine data for FBgn0030117.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 0.80None
Head1 ± 00 of 4 1.90None
Eye2 ± 00 of 4 2.64None
Thoracicoabdominal ganglion1 ± 00 of 4 1.30None
Salivary gland12 ± 40 of 414.14None
Crop2 ± 10 of 4 2.70None
Midgut2 ± 00 of 4 2.60Up
Tubule2 ± 00 of 4 3.00Up
Hindgut1 ± 00 of 4 1.50None
Heart1 ± 10 of 4 1.92None
Fat body2 ± 40 of 4 3.22None
Ovary0 ± 00 of 4 0.90None
Testis4 ± 11 of 4 5.40None
Male accessory glands4 ± 20 of 4 4.50None
Virgin spermatheca2 ± 10 of 4 2.92None
Mated spermatheca7 ± 20 of 4 8.00None
Adult carcass6 ± 20 of 4 6.60None
Larval CNS2 ± 10 of 4 3.03None
Larval Salivary gland4 ± 20 of 4 5.17None
Larval midgut1 ± 00 of 4 1.39None
Larval tubule3 ± 10 of 4 4.20None
Larval hindgut1 ± 00 of 4 1.56None
Larval fat body6 ± 20 of 4 7.40None
Larval trachea3 ± 30 of 4 3.97None
Larval carcass1 ± 00 of 4 1.56None
S2 cells (growing)1 ± 00 of 4 2.19None
Whole fly0 ± 00 of 4

Looking for FBgn0030117. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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