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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030137 through 18771 annotations produced 1 hits



(CG15317):

Annotation Number : CG15317
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030137
Gbrowse : chrX:9449814-9450509 (-) // 100.0 //
Probeset : 1639941_at
Accessions : protein= NP_572569;, nucleotide= NM_132341;
FlyMine data for FBgn0030137.
VDRC has 1 RNAi stocks for FBgn0030137 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain34 ± 24 of 4 0.70Down
Head23 ± 34 of 4 0.50Down
Eye31 ± 24 of 4 0.62Down
Thoracicoabdominal ganglion28 ± 13 of 4 0.60Down
Salivary gland35 ± 71 of 4 0.69None
Crop21 ± 02 of 4 0.40Down
Midgut18 ± 11 of 4 0.40Down
Tubule15 ± 20 of 4 0.30Down
Hindgut17 ± 12 of 4 0.30Down
Heart22 ± 14 of 4 0.43Down
Fat body16 ± 21 of 4 0.31Down
Ovary95 ± 24 of 4 1.90Up
Testis6 ± 10 of 4 0.10Down
Male accessory glands71 ± 23 of 4 1.40Up
Virgin spermatheca7 ± 20 of 4 0.14Down
Mated spermatheca8 ± 10 of 4 0.16Down
Adult carcass9 ± 20 of 4 0.20Down
Larval CNS57 ± 64 of 4 1.13None
Larval Salivary gland67 ± 64 of 4 1.31None
Larval midgut17 ± 21 of 4 0.33Down
Larval tubule30 ± 43 of 4 0.60Down
Larval hindgut37 ± 24 of 4 0.74Down
Larval fat body20 ± 20 of 4 0.40Down
Larval trachea64 ± 64 of 4 1.27Up
Larval carcass29 ± 32 of 4 0.57Down
S2 cells (growing)43 ± 44 of 4 0.86None
Whole fly51 ± 14 of 4

Looking for FBgn0030137. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime