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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030141 through 18771 annotations produced 1 hits



Gga (Gga):

Annotation Number : CG3002
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030141
Gbrowse : chrX:9495066-9498315 (+) // 100.0 //
Probeset : 1625681_at
Accessions : protein= NP_572571;, nucleotide= NM_132343;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred by curator /// 0030
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // inferred from electro
FlyMine data for FBgn0030141.
BDGP gene expression has embryonic in situ data for CG3002: 8 pix of staining in 1 body parts.
TRiP has 1 RNAi stocks for FBgn0030141 available for purchase.
VDRC has 2 RNAi stocks for FBgn0030141 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain115 ± 24 of 4 1.00None
Head105 ± 44 of 4 0.90None
Eye114 ± 64 of 4 0.96None
Thoracicoabdominal ganglion123 ± 44 of 4 1.00None
Salivary gland238 ± 184 of 4 2.00Up
Crop151 ± 94 of 4 1.30Up
Midgut199 ± 114 of 4 1.70Up
Tubule166 ± 54 of 4 1.40Up
Hindgut126 ± 54 of 4 1.10None
Heart74 ± 34 of 4 0.62Down
Fat body57 ± 44 of 4 0.48Down
Ovary227 ± 54 of 4 1.90Up
Testis63 ± 14 of 4 0.50Down
Male accessory glands103 ± 84 of 4 0.90None
Virgin spermatheca115 ± 114 of 4 0.97None
Mated spermatheca105 ± 54 of 4 0.88None
Adult carcass78 ± 44 of 4 0.70Down
Larval CNS187 ± 54 of 4 1.58Up
Larval Salivary gland250 ± 104 of 4 2.11Up
Larval midgut129 ± 114 of 4 1.08None
Larval tubule260 ± 64 of 4 2.20Up
Larval hindgut160 ± 44 of 4 1.35Up
Larval fat body70 ± 54 of 4 0.60Down
Larval trachea187 ± 144 of 4 1.58Up
Larval carcass105 ± 64 of 4 0.88None
S2 cells (growing)95 ± 34 of 4 0.80Down
Whole fly119 ± 64 of 4

Looking for FBgn0030141. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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