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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030148 through 18771 annotations produced 1 hits



(CG3106):

Annotation Number : CG3106
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030148
Gbrowse : chrX:9553128-9556789 (-) // 100.0 //
Probeset : 1624662_at
Accessions : protein= NP_572577;, nucleotide= NM_132349;
Interpro : "0008415 // acyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // infer
FlyMine data for FBgn0030148.
BDGP gene expression has embryonic in situ data for CG3106: 12 pix of staining in 2 body parts.
VDRC has 2 RNAi stocks for FBgn0030148 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 00 of 4 0.00Down
Head5 20 of 4 0.00Down
Eye4 11 of 4 0.02Down
Thoracicoabdominal ganglion5 10 of 4 0.00Down
Salivary gland32 30 of 4 0.17Down
Crop10 10 of 4 0.10Down
Midgut1951 484 of 410.10Up
Tubule4 10 of 4 0.00Down
Hindgut3 10 of 4 0.00Down
Heart4 10 of 4 0.02Down
Fat body6 10 of 4 0.03Down
Ovary3 00 of 4 0.00Down
Testis4 10 of 4 0.00Down
Male accessory glands7 30 of 4 0.00Down
Virgin spermatheca7 10 of 4 0.04Down
Mated spermatheca3 00 of 4 0.02Down
Adult carcass13 30 of 4 0.10Down
Larval CNS7 30 of 4 0.04Down
Larval Salivary gland10 00 of 4 0.05Down
Larval midgut1751 3054 of 4 9.04Up
Larval tubule8 20 of 4 0.00Down
Larval hindgut5 10 of 4 0.03Down
Larval fat body17 10 of 4 0.10Down
Larval trachea9 112 of 4 0.05Down
Larval carcass8 10 of 4 0.04Down
S2 cells (growing)7 20 of 4 0.04Down
Whole fly193 304 of 4

Looking for FBgn0030148. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime