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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030151 through 18771 annotations produced 1 hits



March 2006 (FlyBase/BDGP 5.3) (chrX:9672778-9675953 (+) // 100.0 //):

Annotation Number : CG1354
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID :
Gbrowse :
Probeset : 1623809_s_at
Accessions : protein= , nucleotide=


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain507 ± 214 of 4 0.60Down
Head451 ± 104 of 4 0.60Down
Eye334 ± 154 of 4 0.42Down
Thoracicoabdominal ganglion667 ± 164 of 4 0.80Down
Salivary gland860 ± 324 of 4 1.07None
Crop677 ± 294 of 4 0.80Down
Midgut519 ± 264 of 4 0.60Down
Tubule503 ± 304 of 4 0.60Down
Hindgut441 ± 64 of 4 0.50Down
Heart591 ± 274 of 4 0.74Down
Fat body892 ± 514 of 4 1.11Up
Ovary1101 ± 264 of 4 1.40Up
Testis174 ± 74 of 4 0.20Down
Male accessory glands1522 ± 774 of 4 1.90Up
Virgin spermatheca1533 ± 394 of 4 1.91Up
Mated spermatheca1532 ± 344 of 4 1.91Up
Adult carcass579 ± 394 of 4 0.70Down
Larval CNS1128 ± 634 of 4 1.40Up
Larval Salivary gland963 ± 394 of 4 1.20Up
Larval midgut382 ± 74 of 4 0.48Down
Larval tubule718 ± 284 of 4 0.90Down
Larval hindgut713 ± 164 of 4 0.89Down
Larval fat body660 ± 754 of 4 0.80None
Larval trachea1064 ± 604 of 4 1.32Up
Larval carcass1245 ± 684 of 4 1.55Up
S2 cells (growing)911 ± 164 of 4 1.13Up
Whole fly803 ± 164 of 4

Looking for FBgn0030151. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime