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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030158 through 18771 annotations produced 1 hits



(CG9686):

Annotation Number : CG9686
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030158
Gbrowse : chrX:9773901-9774568 (+) // 100.0 //
Probeset : 1628909_at
Accessions : protein= NP_572586;, nucleotide= NM_132358;
FlyMine data for FBgn0030158.
BDGP gene expression has embryonic in situ data for CG9686: 4 pix of staining in 1 body parts.
VDRC has 3 RNAi stocks for FBgn0030158 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2317 ± 374 of 422.40Up
Head1226 ± 674 of 411.80Up
Eye1682 ± 424 of 416.26Up
Thoracicoabdominal ganglion3171 ± 1004 of 430.60Up
Salivary gland2 ± 00 of 4 0.02Down
Crop2 ± 10 of 4 0.00Down
Midgut0 ± 00 of 4 0.00Down
Tubule2 ± 00 of 4 0.00Down
Hindgut5 ± 20 of 4 0.00Down
Heart7 ± 00 of 4 0.07Down
Fat body14 ± 13 of 4 0.14Down
Ovary1 ± 00 of 4 0.00Down
Testis4 ± 10 of 4 0.00Down
Male accessory glands2 ± 10 of 4 0.00Down
Virgin spermatheca8 ± 01 of 4 0.08Down
Mated spermatheca9 ± 10 of 4 0.09Down
Adult carcass27 ± 63 of 4 0.30Down
Larval CNS1035 ± 614 of 410.00Up
Larval Salivary gland2 ± 00 of 4 0.03Down
Larval midgut2 ± 10 of 4 0.03Down
Larval tubule3 ± 10 of 4 0.00Down
Larval hindgut60 ± 154 of 4 0.59None
Larval fat body63 ± 94 of 4 0.60Down
Larval trachea17 ± 241 of 4 0.16Down
Larval carcass32 ± 173 of 4 0.32Down
S2 cells (growing)3 ± 00 of 4 0.03Down
Whole fly103 ± 84 of 4

Looking for FBgn0030158. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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