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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0030158 through 18771 annotations produced 1 hits


Annotation Number : CG9686
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030158
Gbrowse : chrX:9773901-9774568 (+) // 100.0 //
Probeset : 1628909_at
Accessions : protein= NP_572586;, nucleotide= NM_132358;
FlyMine data for FBgn0030158.
BDGP gene expression has embryonic in situ data for CG9686: 4 pix of staining in 1 body parts.
VDRC has 3 RNAi stocks for FBgn0030158 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2317 374 of 422.40Up
Head1226 674 of 411.80Up
Eye1682 424 of 416.26Up
Thoracicoabdominal ganglion3171 1004 of 430.60Up
Salivary gland2 00 of 4 0.02Down
Crop2 10 of 4 0.00Down
Midgut0 00 of 4 0.00Down
Tubule2 00 of 4 0.00Down
Hindgut5 20 of 4 0.00Down
Heart7 00 of 4 0.07Down
Fat body14 13 of 4 0.14Down
Ovary1 00 of 4 0.00Down
Testis4 10 of 4 0.00Down
Male accessory glands2 10 of 4 0.00Down
Virgin spermatheca8 01 of 4 0.08Down
Mated spermatheca9 10 of 4 0.09Down
Adult carcass27 63 of 4 0.30Down
Larval CNS1035 614 of 410.00Up
Larval Salivary gland2 00 of 4 0.03Down
Larval midgut2 10 of 4 0.03Down
Larval tubule3 10 of 4 0.00Down
Larval hindgut60 154 of 4 0.59None
Larval fat body63 94 of 4 0.60Down
Larval trachea17 241 of 4 0.16Down
Larval carcass32 173 of 4 0.32Down
S2 cells (growing)3 00 of 4 0.03Down
Whole fly103 84 of 4

Looking for FBgn0030158. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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