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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030164 through 18771 annotations produced 1 hits



Fibrinogen-related protein (CG1889):

Annotation Number : CG1889
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030164
Gbrowse : chrX:9859273-9860747 (+) // 100.0 //
Probeset : 1641240_a_at
Accessions : protein= NP_001096931; /// NP_572592; /// NP_727376;, nucleotide= NM_001103461; /// NM_132364; /// NM_167208;
Interpro : 0005102 // receptor binding // inferred from electronic annotation
FlyMine data for FBgn0030164.
BDGP gene expression has embryonic in situ data for CG1889: 14 pix of staining in 1 body parts.
Homophila reports that CG1889 is a close match (7e-21) to human gene FGG (NP_068656), a gene associated with Dysfibrinogenemia, gamma type (3);Hypofibrinogenemia, gamma type (3);Thrombophilia, dysfibrinogenemic (3).
VDRC has 3 RNAi stocks for FBgn0030164 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.10Down
Head146 ± 44 of 4 6.10Up
Eye156 ± 64 of 4 6.55Up
Thoracicoabdominal ganglion2 ± 00 of 4 0.10Down
Salivary gland5 ± 20 of 4 0.23Down
Crop115 ± 44 of 4 4.80Up
Midgut4 ± 20 of 4 0.20Down
Tubule3 ± 00 of 4 0.20Down
Hindgut79 ± 34 of 4 3.30Up
Heart10 ± 24 of 4 0.43Down
Fat body9 ± 21 of 4 0.39Down
Ovary0 ± 00 of 4 0.00Down
Testis3 ± 00 of 4 0.10Down
Male accessory glands1 ± 00 of 4 0.10Down
Virgin spermatheca7 ± 00 of 4 0.29Down
Mated spermatheca7 ± 21 of 4 0.31Down
Adult carcass137 ± 44 of 4 5.80Up
Larval CNS2 ± 20 of 4 0.11Down
Larval Salivary gland1 ± 00 of 4 0.04Down
Larval midgut2 ± 00 of 4 0.09Down
Larval tubule3 ± 10 of 4 0.10Down
Larval hindgut2 ± 10 of 4 0.08Down
Larval fat body3 ± 10 of 4 0.10Down
Larval trachea3 ± 41 of 4 0.16Down
Larval carcass0 ± 00 of 4 0.03Down
S2 cells (growing)0 ± 00 of 4 0.02Down
Whole fly23 ± 14 of 4

Looking for FBgn0030164. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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