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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030174 through 18771 annotations produced 1 hits



(CG15312):

Annotation Number : CG15312
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030174
Gbrowse : chrX:9951126-9964899 (-) // 100.0 //
Probeset : 1638899_s_at
Accessions : protein= NP_572601; /// NP_727390; /// NP_727391;, nucleotide= NM_132373; /// NM_167215; /// NM_167216;
FlyMine data for FBgn0030174.
BDGP gene expression has embryonic in situ data for CG15312: 4 pix of staining in 1 body parts.
VDRC has 1 RNAi stocks for FBgn0030174 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain181 ± 114 of 4 2.80Up
Head38 ± 24 of 4 0.60Down
Eye61 ± 44 of 4 0.95None
Thoracicoabdominal ganglion304 ± 274 of 4 4.70Up
Salivary gland28 ± 52 of 4 0.43Down
Crop15 ± 32 of 4 0.20Down
Midgut3 ± 10 of 4 0.10Down
Tubule11 ± 40 of 4 0.20Down
Hindgut6 ± 00 of 4 0.10Down
Heart18 ± 14 of 4 0.29Down
Fat body25 ± 64 of 4 0.39Down
Ovary194 ± 94 of 4 3.00Up
Testis2 ± 10 of 4 0.00Down
Male accessory glands28 ± 24 of 4 0.40Down
Virgin spermatheca53 ± 34 of 4 0.82Down
Mated spermatheca59 ± 214 of 4 0.92None
Adult carcass22 ± 72 of 4 0.40Down
Larval CNS60 ± 44 of 4 0.93None
Larval Salivary gland18 ± 31 of 4 0.28Down
Larval midgut2 ± 10 of 4 0.04Down
Larval tubule4 ± 30 of 4 0.10Down
Larval hindgut6 ± 10 of 4 0.09Down
Larval fat body6 ± 20 of 4 0.10Down
Larval trachea19 ± 24 of 4 0.30Down
Larval carcass5 ± 10 of 4 0.09Down
S2 cells (growing)10 ± 00 of 4 0.16Down
Whole fly64 ± 34 of 4

Looking for FBgn0030174. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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