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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030177 through 18771 annotations produced 1 hits



(CG2972):

Annotation Number : CG2972
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030177
Gbrowse : chrX:9977202-9979083 (+) // 100.0 //
Probeset : 1633322_at
Accessions : protein= NP_572603;, nucleotide= NM_132375;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0030177.
BioGrid reports that CG2972 interacts with CG7126 CG8933 .
VDRC has 4 RNAi stocks for FBgn0030177 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain36 ± 04 of 4 0.40Down
Head51 ± 44 of 4 0.50Down
Eye40 ± 14 of 4 0.40Down
Thoracicoabdominal ganglion40 ± 24 of 4 0.40Down
Salivary gland66 ± 24 of 4 0.66Down
Crop64 ± 24 of 4 0.60Down
Midgut45 ± 24 of 4 0.50Down
Tubule71 ± 64 of 4 0.70Down
Hindgut54 ± 24 of 4 0.50Down
Heart48 ± 24 of 4 0.49Down
Fat body97 ± 104 of 4 0.98None
Ovary222 ± 24 of 4 2.20Up
Testis43 ± 34 of 4 0.40Down
Male accessory glands116 ± 94 of 4 1.20None
Virgin spermatheca68 ± 34 of 4 0.68Down
Mated spermatheca89 ± 14 of 4 0.90None
Adult carcass52 ± 44 of 4 0.50Down
Larval CNS103 ± 54 of 4 1.04None
Larval Salivary gland91 ± 54 of 4 0.92None
Larval midgut52 ± 34 of 4 0.53Down
Larval tubule44 ± 24 of 4 0.40Down
Larval hindgut88 ± 84 of 4 0.89None
Larval fat body41 ± 44 of 4 0.40Down
Larval trachea89 ± 24 of 4 0.90None
Larval carcass74 ± 94 of 4 0.74None
S2 cells (growing)80 ± 24 of 4 0.80Down
Whole fly99 ± 44 of 4

Looking for FBgn0030177. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime