Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030178 through 18771 annotations produced 1 hits



(CG2974):

Annotation Number : CG2974
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030178
Gbrowse : chrX:9978939-9980204 (-) // 99.18 //
Probeset : 1626760_at
Accessions : protein= NP_572604;, nucleotide= NM_132376;
FlyMine data for FBgn0030178.
BDGP gene expression has embryonic in situ data for CG2974: 4 pix of staining in 1 body parts.
VDRC has 3 RNAi stocks for FBgn0030178 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain24 ± 24 of 4 0.30Down
Head79 ± 54 of 4 1.00None
Eye67 ± 54 of 4 0.83None
Thoracicoabdominal ganglion35 ± 24 of 4 0.40Down
Salivary gland53 ± 103 of 4 0.65None
Crop148 ± 134 of 4 1.80Up
Midgut81 ± 24 of 4 1.00None
Tubule77 ± 44 of 4 1.00None
Hindgut117 ± 64 of 4 1.40Up
Heart94 ± 54 of 4 1.17None
Fat body107 ± 94 of 4 1.33Up
Ovary131 ± 24 of 4 1.60Up
Testis43 ± 34 of 4 0.50Down
Male accessory glands51 ± 34 of 4 0.60Down
Virgin spermatheca173 ± 114 of 4 2.14Up
Mated spermatheca145 ± 114 of 4 1.80Up
Adult carcass79 ± 144 of 4 1.00None
Larval CNS81 ± 44 of 4 1.00None
Larval Salivary gland64 ± 124 of 4 0.80None
Larval midgut54 ± 74 of 4 0.68Down
Larval tubule124 ± 84 of 4 1.50Up
Larval hindgut78 ± 44 of 4 0.97None
Larval fat body153 ± 154 of 4 1.90Up
Larval trachea82 ± 164 of 4 1.02None
Larval carcass69 ± 84 of 4 0.86None
S2 cells (growing)40 ± 44 of 4 0.50Down
Whole fly81 ± 54 of 4

Looking for FBgn0030178. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime