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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030189 through 18771 annotations produced 1 hits



(CG2909):

Annotation Number : CG2909
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030189
Gbrowse : chrX:10220503-10222982 (+) // 100.0 //
Probeset : 1630975_at
Accessions : protein= NP_572616;, nucleotide= NM_132388;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0030189.
BDGP gene expression has embryonic in situ data for CG2909: 4 pix of staining in 1 body parts.
BioGrid reports that CG2909 interacts with CG30417 .
VDRC has 2 RNAi stocks for FBgn0030189 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain80 ± 34 of 4 1.70Up
Head49 ± 24 of 4 1.10None
Eye57 ± 24 of 4 1.24Up
Thoracicoabdominal ganglion87 ± 14 of 4 1.90Up
Salivary gland65 ± 74 of 4 1.43None
Crop58 ± 24 of 4 1.30Up
Midgut104 ± 54 of 4 2.30Up
Tubule63 ± 74 of 4 1.40Up
Hindgut55 ± 14 of 4 1.20None
Heart86 ± 54 of 4 1.88Up
Fat body104 ± 144 of 4 2.27Up
Ovary54 ± 44 of 4 1.20None
Testis62 ± 44 of 4 1.30Up
Male accessory glands50 ± 34 of 4 1.10None
Virgin spermatheca76 ± 94 of 4 1.65Up
Mated spermatheca96 ± 64 of 4 2.10Up
Adult carcass76 ± 64 of 4 1.70Up
Larval CNS76 ± 84 of 4 1.65Up
Larval Salivary gland52 ± 44 of 4 1.14None
Larval midgut109 ± 24 of 4 2.37Up
Larval tubule108 ± 64 of 4 2.40Up
Larval hindgut65 ± 44 of 4 1.42Up
Larval fat body66 ± 64 of 4 1.40None
Larval trachea58 ± 104 of 4 1.28None
Larval carcass60 ± 54 of 4 1.30None
S2 cells (growing)159 ± 84 of 4 3.46Up
Whole fly46 ± 34 of 4

Looking for FBgn0030189. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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