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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030195 through 18771 annotations produced 1 hits



(CG2898):

Annotation Number : CG2898
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030195
Gbrowse : chrX:10269482-10270586 (+) // 100.0 //
Probeset : 1627292_at
Accessions : protein= NP_572623;, nucleotide= NM_132395;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0030195.
VDRC has 2 RNAi stocks for FBgn0030195 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 11 of 4 0.20Down
Head7 ± 00 of 4 0.40Down
Eye5 ± 20 of 4 0.25Down
Thoracicoabdominal ganglion7 ± 11 of 4 0.40Down
Salivary gland12 ± 31 of 4 0.56None
Crop9 ± 11 of 4 0.40Down
Midgut8 ± 02 of 4 0.40Down
Tubule7 ± 00 of 4 0.30Down
Hindgut6 ± 10 of 4 0.30Down
Heart7 ± 11 of 4 0.37Down
Fat body10 ± 13 of 4 0.48Down
Ovary4 ± 01 of 4 0.20Down
Testis206 ± 14 of 4 9.70Up
Male accessory glands16 ± 41 of 4 0.80None
Virgin spermatheca12 ± 22 of 4 0.59Down
Mated spermatheca8 ± 01 of 4 0.41Down
Adult carcass12 ± 10 of 4 0.60Down
Larval CNS6 ± 12 of 4 0.32Down
Larval Salivary gland9 ± 20 of 4 0.46Down
Larval midgut10 ± 13 of 4 0.50Down
Larval tubule3 ± 10 of 4 0.20Down
Larval hindgut6 ± 02 of 4 0.31Down
Larval fat body24 ± 64 of 4 1.10None
Larval trachea7 ± 31 of 4 0.37Down
Larval carcass8 ± 00 of 4 0.39Down
S2 cells (growing)5 ± 11 of 4 0.27Down
Whole fly21 ± 14 of 4

Looking for FBgn0030195. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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