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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030200 through 18771 annotations produced 1 hits



RabX2 (RabX2):

Annotation Number : CG2885
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030200
Gbrowse : chrX:10311528-10312116 (+) // 100.0 //
Probeset : 1629253_at
Accessions : protein= NP_572627;, nucleotide= NM_132399;
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from seq
FlyMine data for FBgn0030200.
Homophila reports that CG2885 is a close match (5e-11) to human gene RRAS2;TC21 (NP_001096139), a gene associated with Ovarian carcinoma (3).
TRiP has 1 RNAi stocks for FBgn0030200 available for purchase.
VDRC has 3 RNAi stocks for FBgn0030200 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 ± 11 of 4 0.50None
Head7 ± 20 of 4 0.70None
Eye3 ± 00 of 4 0.29Down
Thoracicoabdominal ganglion5 ± 10 of 4 0.50None
Salivary gland10 ± 30 of 4 0.90None
Crop5 ± 00 of 4 0.50Down
Midgut2 ± 00 of 4 0.20Down
Tubule3 ± 00 of 4 0.30Down
Hindgut7 ± 10 of 4 0.60None
Heart1 ± 00 of 4 0.15Down
Fat body6 ± 52 of 4 0.61None
Ovary2 ± 10 of 4 0.20Down
Testis79 ± 84 of 4 7.10Up
Male accessory glands11 ± 50 of 4 1.00None
Virgin spermatheca10 ± 10 of 4 0.91None
Mated spermatheca9 ± 11 of 4 0.85None
Adult carcass5 ± 00 of 4 0.50Down
Larval CNS3 ± 20 of 4 0.30Down
Larval Salivary gland1 ± 00 of 4 0.15Down
Larval midgut1 ± 00 of 4 0.17Down
Larval tubule4 ± 11 of 4 0.40Down
Larval hindgut7 ± 00 of 4 0.69None
Larval fat body24 ± 62 of 4 2.20None
Larval trachea6 ± 20 of 4 0.61None
Larval carcass8 ± 10 of 4 0.72None
S2 cells (growing)5 ± 10 of 4 0.48None
Whole fly11 ± 12 of 4

Looking for FBgn0030200. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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