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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030202 through 18771 annotations produced 1 hits



(CG12640):

Annotation Number : CG12640
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030202
Gbrowse : chrX:10326497-10326845 (-) // 100.0 //
Probeset : 1640354_at
Accessions : protein= NP_572629;, nucleotide= NM_132401;
Interpro : 0005524 // ATP binding // inferred from electronic annotation
FlyMine data for FBgn0030202.
VDRC has 2 RNAi stocks for FBgn0030202 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain7 ± 12 of 4 2.50None
Head4 ± 10 of 4 1.40None
Eye4 ± 10 of 4 1.37None
Thoracicoabdominal ganglion3 ± 10 of 4 1.30None
Salivary gland9 ± 20 of 4 3.13None
Crop8 ± 10 of 4 2.60Up
Midgut8 ± 10 of 4 2.70Up
Tubule7 ± 10 of 4 2.40Up
Hindgut7 ± 10 of 4 2.30None
Heart1 ± 00 of 4 0.62None
Fat body5 ± 30 of 4 1.93None
Ovary5 ± 02 of 4 1.90None
Testis3 ± 00 of 4 1.20None
Male accessory glands20 ± 42 of 4 6.70Up
Virgin spermatheca12 ± 13 of 4 4.08Up
Mated spermatheca17 ± 53 of 4 5.65None
Adult carcass6 ± 10 of 4 2.20None
Larval CNS5 ± 22 of 4 1.65None
Larval Salivary gland6 ± 10 of 4 1.94None
Larval midgut11 ± 10 of 4 3.64Up
Larval tubule11 ± 01 of 4 3.60Up
Larval hindgut4 ± 10 of 4 1.42None
Larval fat body2 ± 10 of 4 0.80None
Larval trachea1 ± 10 of 4 0.55None
Larval carcass4 ± 10 of 4 1.38None
S2 cells (growing)1 ± 00 of 4 0.56None
Whole fly3 ± 00 of 4

Looking for FBgn0030202. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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