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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030208 through 18771 annotations produced 1 hits



Protein phosphatase 4 regulatory subunit 2-related protein (PPP4R2r):

Annotation Number : CG2890
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030208
Gbrowse : chrX:10372865-10375977 (+) // 100.0 //
Probeset : 1631618_s_at
Accessions : protein= NP_525083; /// NP_727427; /// NP_996400;, nucleotide= NM_080344; /// NM_167232; /// NM_206677;
Pathway : 0030289 // protein phosphatase 4 complex // inferred from sequence or structural similarity
Interpro : 0019888 // protein phosphatase regulator activity // inferred from sequence or structural similarity
FlyMine data for FBgn0030208.
TRiP has 1 RNAi stocks for FBgn0030208 available for purchase.
VDRC has 3 RNAi stocks for FBgn0030208 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain189 ± 134 of 4 1.30None
Head77 ± 44 of 4 0.50Down
Eye31 ± 44 of 4 0.21Down
Thoracicoabdominal ganglion152 ± 144 of 4 1.00None
Salivary gland114 ± 84 of 4 0.76None
Crop58 ± 54 of 4 0.40Down
Midgut64 ± 44 of 4 0.40Down
Tubule59 ± 24 of 4 0.40Down
Hindgut60 ± 54 of 4 0.40Down
Heart53 ± 34 of 4 0.36Down
Fat body61 ± 74 of 4 0.41Down
Ovary297 ± 64 of 4 2.00Up
Testis17 ± 14 of 4 0.10Down
Male accessory glands198 ± 134 of 4 1.30None
Virgin spermatheca48 ± 24 of 4 0.32Down
Mated spermatheca54 ± 74 of 4 0.36Down
Adult carcass54 ± 34 of 4 0.40Down
Larval CNS394 ± 574 of 4 2.63Up
Larval Salivary gland415 ± 224 of 4 2.77Up
Larval midgut81 ± 64 of 4 0.54Down
Larval tubule212 ± 104 of 4 1.40Up
Larval hindgut143 ± 84 of 4 0.95None
Larval fat body133 ± 64 of 4 0.90None
Larval trachea86 ± 184 of 4 0.58Down
Larval carcass150 ± 24 of 4 1.01None
S2 cells (growing)240 ± 34 of 4 1.61Up
Whole fly150 ± 174 of 4

Looking for FBgn0030208. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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