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FlyAtlas: the Drosophila gene expression atlas

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This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030221 through 18771 annotations produced 1 hits



Rab9D /// CG9807 /// CG32673 /// CG32671 (Rab9D /// Rab9Db /// Rab9E /// Rab9Fa):

Annotation Number : CG32678
Flybase ID : FBgn0030221 /// FBgn0052671 /// FBgn0052673 /// FBgn0067052
Gbrowse : chrUextra:16408664-16409184 (+) // 86.03 // /// chrX:10483214-10483808 (+) // 100.0 // /// chrX:10844402-10844996 (-) // 99.16 // /// chrX:10555197-10555791 (-) // 99.16 // /// chrX:10516597-10517191 (-) // 98.32 //
Probeset : 1623791_s_at
Accessions : protein= NP_572642; /// NP_727432; /// NP_727438; /// NP_727471;, nucleotide= NM_132414; /// NM_167237; /// NM_167238; /// NM_167260;
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from seq
FlyMine data for FBgn0030221 /// FBgn0052671 /// FBgn0052673 /// FBgn0067052.
Homophila reports that CG32678 is a close match (5e-11) to human gene RRAS2;TC21 (NP_036382), a gene associated with Ovarian carcinoma (3).


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 01 of 4 0.50Down
Head4 10 of 4 0.30Down
Eye3 10 of 4 0.29Down
Thoracicoabdominal ganglion5 10 of 4 0.40Down
Salivary gland18 30 of 4 1.46None
Crop6 20 of 4 0.50None
Midgut3 00 of 4 0.20Down
Tubule8 10 of 4 0.70Down
Hindgut4 10 of 4 0.30Down
Heart3 10 of 4 0.25Down
Fat body18 73 of 4 1.46None
Ovary2 01 of 4 0.20Down
Testis192 34 of 415.40Up
Male accessory glands13 10 of 4 1.10None
Virgin spermatheca13 22 of 4 1.11None
Mated spermatheca20 63 of 4 1.61None
Adult carcass7 10 of 4 0.60None
Larval CNS9 53 of 4 0.77None
Larval Salivary gland11 11 of 4 0.92None
Larval midgut2 00 of 4 0.21Down
Larval tubule6 10 of 4 0.50Down
Larval hindgut5 00 of 4 0.40Down
Larval fat body34 134 of 4 2.80None
Larval trachea4 20 of 4 0.35Down
Larval carcass5 00 of 4 0.41Down
S2 cells (growing)2 11 of 4 0.19Down
Whole fly12 13 of 4

Looking for FBgn0030221. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime