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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030223 through 18771 annotations produced 1 hits



(CG2111):

Annotation Number : CG2111
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030223
Gbrowse : chrX:10551721-10554704 (+) // 100.0 //
Probeset : 1636236_at
Accessions : protein= NP_572644;, nucleotide= NM_132416;
Pathway : engulfment // inferred from mutant phenotype"
FlyMine data for FBgn0030223.
VDRC has 2 RNAi stocks for FBgn0030223 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 0.30None
Head2 ± 00 of 4 0.20None
Eye1 ± 10 of 4 0.19None
Thoracicoabdominal ganglion3 ± 10 of 4 0.40None
Salivary gland1 ± 00 of 4 0.21None
Crop1 ± 00 of 4 0.20None
Midgut5 ± 10 of 4 0.60None
Tubule4 ± 00 of 4 0.40Down
Hindgut2 ± 10 of 4 0.20None
Heart3 ± 10 of 4 0.43None
Fat body3 ± 20 of 4 0.40None
Ovary1 ± 00 of 4 0.10None
Testis3 ± 10 of 4 0.40None
Male accessory glands1489 ± 824 of 4164.60Up
Virgin spermatheca4 ± 11 of 4 0.47None
Mated spermatheca3 ± 00 of 4 0.35None
Adult carcass7 ± 10 of 4 0.80None
Larval CNS2 ± 10 of 4 0.27None
Larval Salivary gland2 ± 00 of 4 0.23None
Larval midgut5 ± 10 of 4 0.56None
Larval tubule2 ± 10 of 4 0.30None
Larval hindgut1 ± 00 of 4 0.19None
Larval fat body2 ± 00 of 4 0.20None
Larval trachea1 ± 10 of 4 0.20None
Larval carcass2 ± 00 of 4 0.31None
S2 cells (growing)0 ± 00 of 4 0.11None
Whole fly9 ± 31 of 4

Looking for FBgn0030223. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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