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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030230 through 18771 annotations produced 1 hits



dm-rabphilin (Rph):

Annotation Number : CG11556
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030230
Gbrowse : chrX:10643102-10651699 (-) // 100.0 //
Probeset : 1639837_at
Accessions : protein= NP_001162715; /// NP_572651;, nucleotide= NM_001169244; /// NM_132423;
Pathway : 0008021 // synaptic vesicle // inferred from electronic annotation /// 0008021 // synaptic vesicle // non-traceable auth
Interpro : 0005215 // transporter activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from e
FlyMine data for FBgn0030230.
Homophila reports that CG11556 is a close match (2e-14) to human gene PKCC;PKCG;PRKCG;SCA14 (NP_002730), a gene associated with Spinocerebellar ataxia 14, 605361 (3).
TRiP has 1 RNAi stocks for FBgn0030230 available for purchase.
VDRC has 3 RNAi stocks for FBgn0030230 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain390 ± 144 of 428.00Up
Head103 ± 64 of 4 7.40Up
Eye74 ± 74 of 4 5.36Up
Thoracicoabdominal ganglion194 ± 74 of 413.90Up
Salivary gland5 ± 30 of 4 0.42None
Crop4 ± 12 of 4 0.30Down
Midgut9 ± 14 of 4 0.70None
Tubule2 ± 00 of 4 0.20Down
Hindgut4 ± 02 of 4 0.30Down
Heart8 ± 03 of 4 0.57None
Fat body6 ± 14 of 4 0.43Down
Ovary2 ± 02 of 4 0.20Down
Testis8 ± 14 of 4 0.60None
Male accessory glands6 ± 11 of 4 0.40Down
Virgin spermatheca6 ± 12 of 4 0.44Down
Mated spermatheca4 ± 02 of 4 0.30Down
Adult carcass8 ± 21 of 4 0.60None
Larval CNS234 ± 264 of 416.82Up
Larval Salivary gland2 ± 10 of 4 0.16Down
Larval midgut8 ± 04 of 4 0.60None
Larval tubule1 ± 00 of 4 0.10Down
Larval hindgut4 ± 11 of 4 0.28Down
Larval fat body10 ± 12 of 4 0.70None
Larval trachea4 ± 21 of 4 0.31Down
Larval carcass4 ± 02 of 4 0.35Down
S2 cells (growing)8 ± 04 of 4 0.64None
Whole fly14 ± 24 of 4

Looking for FBgn0030230. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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