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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030237 through 18771 annotations produced 1 hits



(CG15209):

Annotation Number : CG15209
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030237
Gbrowse : chrX:10736187-10737036 (+) // 100.0 //
Probeset : 1627744_at
Accessions : protein= NP_572654;, nucleotide= NM_132426;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0030237.
BDGP gene expression has embryonic in situ data for CG15209: 12 pix of staining in 3 body parts.
BioGrid reports that CG15209 interacts with CG8697 CG4877 .
VDRC has 2 RNAi stocks for FBgn0030237 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2864 ± 694 of 4 6.60Up
Head2371 ± 794 of 4 5.40Up
Eye2277 ± 404 of 4 5.21Up
Thoracicoabdominal ganglion3547 ± 1054 of 4 8.10Up
Salivary gland54 ± 94 of 4 0.12Down
Crop24 ± 44 of 4 0.10Down
Midgut1548 ± 754 of 4 3.50Up
Tubule222 ± 444 of 4 0.50Down
Hindgut269 ± 84 of 4 0.60Down
Heart5886 ± 4504 of 413.48Up
Fat body1420 ± 2084 of 4 3.25Up
Ovary23 ± 14 of 4 0.10Down
Testis40 ± 24 of 4 0.10Down
Male accessory glands22 ± 33 of 4 0.10Down
Virgin spermatheca46 ± 64 of 4 0.11Down
Mated spermatheca43 ± 64 of 4 0.10Down
Adult carcass1543 ± 1074 of 4 3.50Up
Larval CNS924 ± 744 of 4 2.12Up
Larval Salivary gland79 ± 94 of 4 0.18Down
Larval midgut1444 ± 1004 of 4 3.31Up
Larval tubule742 ± 284 of 4 1.70Up
Larval hindgut672 ± 374 of 4 1.54Up
Larval fat body120 ± 194 of 4 0.30Down
Larval trachea197 ± 2874 of 4 0.45None
Larval carcass758 ± 314 of 4 1.74Up
S2 cells (growing)1355 ± 174 of 4 3.10Up
Whole fly436 ± 284 of 4

Looking for FBgn0030237. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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