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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030240 through 18771 annotations produced 1 hits



(CG2202):

Annotation Number : CG2202
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030240
Gbrowse : chrX:10742794-10746171 (+) // 100.0 //
Probeset : 1626215_at
Accessions : protein= NP_572657;, nucleotide= NM_132429;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annot
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from p
FlyMine data for FBgn0030240.
Homophila reports that CG2202 is a close match (7e-12) to human gene FKLF;FKLF1;KLF11;MODY7;TIEG2 (NP_003588), a gene associated with Maturity-onset diabetes of the young, type VII, 610508 (3).
BioGrid reports that CG2202 interacts with CG9331 .
TRiP has 1 RNAi stocks for FBgn0030240 available for purchase.
VDRC has 3 RNAi stocks for FBgn0030240 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain57 ± 34 of 4 0.90None
Head55 ± 54 of 4 0.90None
Eye135 ± 64 of 4 2.17Up
Thoracicoabdominal ganglion48 ± 34 of 4 0.80None
Salivary gland55 ± 34 of 4 0.88None
Crop40 ± 54 of 4 0.70Down
Midgut30 ± 24 of 4 0.50Down
Tubule33 ± 04 of 4 0.50Down
Hindgut38 ± 24 of 4 0.60Down
Heart20 ± 14 of 4 0.32Down
Fat body31 ± 64 of 4 0.50Down
Ovary171 ± 64 of 4 2.80Up
Testis76 ± 34 of 4 1.20Up
Male accessory glands50 ± 24 of 4 0.80None
Virgin spermatheca16 ± 04 of 4 0.26Down
Mated spermatheca19 ± 24 of 4 0.30Down
Adult carcass36 ± 74 of 4 0.60Down
Larval CNS52 ± 34 of 4 0.84None
Larval Salivary gland74 ± 54 of 4 1.19None
Larval midgut36 ± 04 of 4 0.59Down
Larval tubule41 ± 14 of 4 0.70Down
Larval hindgut36 ± 14 of 4 0.59Down
Larval fat body30 ± 43 of 4 0.50Down
Larval trachea28 ± 84 of 4 0.46Down
Larval carcass36 ± 24 of 4 0.58Down
S2 cells (growing)76 ± 94 of 4 1.23None
Whole fly62 ± 44 of 4

Looking for FBgn0030240. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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