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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030242 through 18771 annotations produced 1 hits



sister of feo (sofe):

Annotation Number : CG1655
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030242
Gbrowse : chrX:10749173-10751415 (-) // 100.0 //
Probeset : 1632732_at
Accessions : protein= NP_572659;, nucleotide= NM_132431;
Pathway : 0005834 // heterotrimeric G-protein complex // inferred from electronic annotation
Interpro : 0004871 // signal transducer activity // inferred from electronic annotation /// 0005515 // protein binding // inferred
FlyMine data for FBgn0030242.
BioGrid reports that CG1655 interacts with CG31156 CG9188 CG2774 CG5303 CG5376 CG9842 Dmel CG17172 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain11 14 of 4 0.10Down
Head12 12 of 4 0.10Down
Eye22 14 of 4 0.13Down
Thoracicoabdominal ganglion13 14 of 4 0.10Down
Salivary gland10 30 of 4 0.06Down
Crop17 12 of 4 0.10Down
Midgut13 22 of 4 0.10Down
Tubule14 21 of 4 0.10Down
Hindgut16 02 of 4 0.10Down
Heart7 11 of 4 0.05Down
Fat body12 13 of 4 0.07Down
Ovary358 114 of 4 2.10Up
Testis523 234 of 4 3.10Up
Male accessory glands7 20 of 4 0.00Down
Virgin spermatheca10 13 of 4 0.06Down
Mated spermatheca8 10 of 4 0.05Down
Adult carcass13 22 of 4 0.10Down
Larval CNS97 54 of 4 0.58Down
Larval Salivary gland11 00 of 4 0.07Down
Larval midgut14 02 of 4 0.09Down
Larval tubule19 24 of 4 0.10Down
Larval hindgut20 13 of 4 0.12Down
Larval fat body78 333 of 4 0.50None
Larval trachea51 84 of 4 0.31Down
Larval carcass22 13 of 4 0.14Down
S2 cells (growing)62 24 of 4 0.37Down
Whole fly167 74 of 4

Looking for FBgn0030242. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime