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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0030244 through 18771 annotations produced 1 hits


Annotation Number : CG2157
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030244
Gbrowse : chrX:10763338-10764710 (+) // 100.0 //
Probeset : 1634136_at
Accessions : protein= NP_572661;, nucleotide= NM_132433;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0030244.
BDGP gene expression has embryonic in situ data for CG2157: 24 pix of staining in 9 body parts.
BioGrid reports that CG2157 interacts with CG9192 CG3218 CG3780 CG7697 .
VDRC has 2 RNAi stocks for FBgn0030244 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain9 02 of 4 0.30Down
Head50 54 of 4 1.80Up
Eye18 14 of 4 0.64Down
Thoracicoabdominal ganglion8 11 of 4 0.30Down
Salivary gland20 20 of 4 0.73Down
Crop4 10 of 4 0.20Down
Midgut7 10 of 4 0.30Down
Tubule6 10 of 4 0.20Down
Hindgut60 14 of 4 2.20Up
Heart9 10 of 4 0.32Down
Fat body14 22 of 4 0.51Down
Ovary7 11 of 4 0.30Down
Testis45 24 of 4 1.60Up
Male accessory glands12 31 of 4 0.40Down
Virgin spermatheca7 21 of 4 0.25Down
Mated spermatheca12 51 of 4 0.44None
Adult carcass121 84 of 4 4.30Up
Larval CNS3 20 of 4 0.12Down
Larval Salivary gland7 20 of 4 0.26Down
Larval midgut5 20 of 4 0.19Down
Larval tubule5 10 of 4 0.20Down
Larval hindgut1227 524 of 443.69Up
Larval fat body9 20 of 4 0.30Down
Larval trachea398 294 of 414.17Up
Larval carcass31 34 of 4 1.11None
S2 cells (growing)4 10 of 4 0.17Down
Whole fly28 04 of 4

Looking for FBgn0030244. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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