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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030245 through 18771 annotations produced 3 hits



(CG1637):

Annotation Number : CG1637
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030245
Gbrowse : chrX:10766373-10771840 (-) // 100.0 //
Probeset : 1624797_at
Accessions : protein= NP_572662; /// NP_727464; /// NP_727465;, nucleotide= NM_132434; /// NM_167257; /// NM_167258;
Interpro : 0003993 // acid phosphatase activity // inferred from sequence or structural similarity /// 0003993 // acid phosphatase
FlyMine data for FBgn0030245.
BDGP gene expression has embryonic in situ data for CG1637: 31 pix of staining in 16 body parts.
BioGrid reports that CG1637 interacts with CG2830 .
TRiP has 1 RNAi stocks for FBgn0030245 available for purchase.
VDRC has 1 RNAi stocks for FBgn0030245 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain20 ± 00 of 4 0.30Down
Head28 ± 11 of 4 0.50Down
Eye14 ± 23 of 4 0.23Down
Thoracicoabdominal ganglion20 ± 00 of 4 0.30Down
Salivary gland149 ± 64 of 4 2.41Up
Crop78 ± 14 of 4 1.30Up
Midgut125 ± 54 of 4 2.00Up
Tubule243 ± 533 of 4 3.90Up
Hindgut75 ± 33 of 4 1.20Up
Heart161 ± 164 of 4 2.60Up
Fat body45 ± 50 of 4 0.73Down
Ovary56 ± 13 of 4 0.90Down
Testis71 ± 14 of 4 1.10Up
Male accessory glands591 ± 144 of 4 9.50Up
Virgin spermatheca73 ± 34 of 4 1.18None
Mated spermatheca59 ± 54 of 4 0.95None
Adult carcass55 ± 20 of 4 0.90None
Larval CNS18 ± 20 of 4 0.30Down
Larval Salivary gland147 ± 44 of 4 2.37Up
Larval midgut85 ± 82 of 4 1.37None
Larval tubule109 ± 103 of 4 1.80Up
Larval hindgut27 ± 20 of 4 0.44Down
Larval fat body56 ± 42 of 4 0.90None
Larval trachea24 ± 53 of 4 0.40Down
Larval carcass36 ± 60 of 4 0.59Down
S2 cells (growing)66 ± 20 of 4 1.07None
Whole fly62 ± 13 of 4



(CG1637):

Annotation Number : CG1637
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030245
Gbrowse : chrX:10768506-10771840 (-) // 100.0 //
Probeset : 1633563_at
Accessions : protein= NP_572662; /// NP_727464; /// NP_727465;, nucleotide= NM_132434; /// NM_167257; /// NM_167258;
Interpro : 0003993 // acid phosphatase activity // inferred from sequence or structural similarity /// 0003993 // acid phosphatase
FlyMine data for FBgn0030245.
BDGP gene expression has embryonic in situ data for CG1637: 31 pix of staining in 16 body parts.
BioGrid reports that CG1637 interacts with CG2830 .
TRiP has 1 RNAi stocks for FBgn0030245 available for purchase.
VDRC has 1 RNAi stocks for FBgn0030245 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain193 ± 34 of 4 2.00Up
Head142 ± 124 of 4 1.50Up
Eye42 ± 04 of 4 0.45Down
Thoracicoabdominal ganglion137 ± 54 of 4 1.40Up
Salivary gland100 ± 84 of 4 1.05None
Crop197 ± 124 of 4 2.10Up
Midgut131 ± 84 of 4 1.40Up
Tubule299 ± 594 of 4 3.10Up
Hindgut206 ± 24 of 4 2.20Up
Heart264 ± 124 of 4 2.78Up
Fat body78 ± 234 of 4 0.82None
Ovary84 ± 34 of 4 0.90None
Testis60 ± 64 of 4 0.60Down
Male accessory glands605 ± 404 of 4 6.40Up
Virgin spermatheca37 ± 24 of 4 0.39Down
Mated spermatheca32 ± 24 of 4 0.34Down
Adult carcass114 ± 104 of 4 1.20None
Larval CNS49 ± 114 of 4 0.52Down
Larval Salivary gland36 ± 11 of 4 0.38Down
Larval midgut64 ± 64 of 4 0.67Down
Larval tubule99 ± 34 of 4 1.00None
Larval hindgut50 ± 64 of 4 0.53Down
Larval fat body22 ± 43 of 4 0.20Down
Larval trachea46 ± 154 of 4 0.49Down
Larval carcass22 ± 61 of 4 0.23Down
S2 cells (growing)213 ± 34 of 4 2.25Up
Whole fly95 ± 54 of 4



(CG1637):

Annotation Number : CG1637
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030245
Gbrowse : chrX:10764614-10771840 (-) // 100.0 //
Probeset : 1623285_at
Accessions : protein= NP_572662; /// NP_727464; /// NP_727465;, nucleotide= NM_132434; /// NM_167257; /// NM_167258;
Interpro : 0003993 // acid phosphatase activity // inferred from sequence or structural similarity /// 0003993 // acid phosphatase
FlyMine data for FBgn0030245.
BDGP gene expression has embryonic in situ data for CG1637: 31 pix of staining in 16 body parts.
BioGrid reports that CG1637 interacts with CG2830 .
TRiP has 1 RNAi stocks for FBgn0030245 available for purchase.
VDRC has 1 RNAi stocks for FBgn0030245 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain458 ± 74 of 4 1.30Up
Head520 ± 74 of 4 1.50Up
Eye457 ± 134 of 4 1.32Up
Thoracicoabdominal ganglion515 ± 224 of 4 1.50Up
Salivary gland555 ± 224 of 4 1.61Up
Crop648 ± 104 of 4 1.90Up
Midgut796 ± 194 of 4 2.30Up
Tubule979 ± 1564 of 4 2.80Up
Hindgut503 ± 74 of 4 1.50Up
Heart1502 ± 394 of 4 4.35Up
Fat body644 ± 174 of 4 1.86Up
Ovary361 ± 24 of 4 1.00None
Testis174 ± 24 of 4 0.50Down
Male accessory glands675 ± 404 of 4 2.00Up
Virgin spermatheca798 ± 224 of 4 2.31Up
Mated spermatheca744 ± 214 of 4 2.15Up
Adult carcass573 ± 94 of 4 1.70Up
Larval CNS156 ± 64 of 4 0.45Down
Larval Salivary gland468 ± 154 of 4 1.36Up
Larval midgut738 ± 644 of 4 2.14Up
Larval tubule545 ± 184 of 4 1.60Up
Larval hindgut268 ± 254 of 4 0.78None
Larval fat body692 ± 644 of 4 2.00Up
Larval trachea419 ± 1294 of 4 1.21None
Larval carcass372 ± 354 of 4 1.08None
S2 cells (growing)665 ± 194 of 4 1.93Up
Whole fly345 ± 174 of 4

Looking for FBgn0030245. 3 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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