FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0030246 through 18771 annotations produced 1 hits

(CG1582):

Annotation Number : CG1582
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030246
Gbrowse : chrX:10788968-10793335 (-) // 100.0 //
Probeset : 1634316_at
Accessions : protein= NP_572663;, nucleotide= NM_132435;
Interpro : "0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred fr
FlyMine data for FBgn0030246.
BDGP gene expression has embryonic in situ data for CG1582: 14 pix of staining in 8 body parts.
VDRC has 1 RNAi stocks for FBgn0030246 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	82 ± 2	4 of 4	0.80	None
Head	54 ± 4	4 of 4	0.60	Down
Eye	104 ± 2	4 of 4	1.06	None
Thoracicoabdominal ganglion	82 ± 5	4 of 4	0.80	None
Salivary gland	82 ± 10	4 of 4	0.83	None
Crop	101 ± 4	4 of 4	1.00	None
Midgut	99 ± 7	4 of 4	1.00	None
Tubule	90 ± 8	4 of 4	0.90	None
Hindgut	94 ± 7	4 of 4	1.00	None
Heart	104 ± 4	4 of 4	1.06	None
Fat body	77 ± 4	4 of 4	0.79	Down
Ovary	151 ± 6	4 of 4	1.50	Up
Testis	133 ± 7	4 of 4	1.40	Up
Male accessory glands	100 ± 5	4 of 4	1.00	None
Virgin spermatheca	65 ± 3	4 of 4	0.67	Down
Mated spermatheca	88 ± 6	4 of 4	0.90	None
Adult carcass	91 ± 4	4 of 4	0.90	None
Larval CNS	96 ± 9	4 of 4	0.99	None
Larval Salivary gland	109 ± 5	4 of 4	1.11	None
Larval midgut	89 ± 3	4 of 4	0.91	None
Larval tubule	65 ± 4	4 of 4	0.70	Down
Larval hindgut	103 ± 6	4 of 4	1.06	None
Larval fat body	51 ± 2	4 of 4	0.50	Down
Larval trachea	238 ± 13	4 of 4	2.43	Up
Larval carcass	112 ± 7	4 of 4	1.15	None
S2 cells (growing)	200 ± 6	4 of 4	2.04	Up
Whole fly	98 ± 5	4 of 4

Looking for FBgn0030246. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720