Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

 University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0030247 through 18771 annotations produced 1 hits


(CG15208):

Annotation Number : CG15208
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030247
Gbrowse : chrX:10794392-10795771 (+) // 100.0 //
Probeset : 1631467_at
Accessions : protein= NP_572664;, nucleotide= NM_132436;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0030247.
BDGP gene expression has embryonic in situ data for CG15208: 4 pix of staining in 1 body parts.
BioGrid reports that CG15208 interacts with CG8981 .
VDRC has 2 RNAi stocks for FBgn0030247 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 0.00Down
Head2 ± 00 of 4 0.00Down
Eye1 ± 00 of 4 0.02Down
Thoracicoabdominal ganglion1 ± 00 of 4 0.00Down
Salivary gland2 ± 00 of 4 0.04Down
Crop4 ± 10 of 4 0.10Down
Midgut2 ± 00 of 4 0.00Down
Tubule2 ± 10 of 4 0.00Down
Hindgut2 ± 10 of 4 0.00Down
Heart0 ± 00 of 4 0.01Down
Fat body2 ± 00 of 4 0.03Down
Ovary0 ± 00 of 4 0.00Down
Testis1101 ± 334 of 414.20Up
Male accessory glands4 ± 20 of 4 0.10Down
Virgin spermatheca2 ± 10 of 4 0.03Down
Mated spermatheca2 ± 10 of 4 0.03Down
Adult carcass2 ± 10 of 4 0.00Down
Larval CNS1 ± 00 of 4 0.02Down
Larval Salivary gland4 ± 00 of 4 0.06Down
Larval midgut2 ± 00 of 4 0.03Down
Larval tubule3 ± 10 of 4 0.10Down
Larval hindgut2 ± 00 of 4 0.03Down
Larval fat body173 ± 994 of 4 2.20None
Larval trachea5 ± 71 of 4 0.07Down
Larval carcass1 ± 00 of 4 0.02Down
S2 cells (growing)1 ± 00 of 4 0.02Down
Whole fly77 ± 34 of 4

Looking for FBgn0030247. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime