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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030258 through 18771 annotations produced 1 hits



(CG1552):

Annotation Number : CG1552
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030258
Gbrowse : chrX:10946367-10947549 (-) // 100.0 //
Probeset : 1633589_a_at
Accessions : protein= NP_572676; /// NP_727479;, nucleotide= NM_132448; /// NM_167263;
FlyMine data for FBgn0030258.
VDRC has 3 RNAi stocks for FBgn0030258 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2254 ± 74 of 440.40Up
Head688 ± 434 of 412.30Up
Eye21 ± 34 of 4 0.39Down
Thoracicoabdominal ganglion3909 ± 2264 of 470.10Up
Salivary gland11 ± 40 of 4 0.21Down
Crop10 ± 10 of 4 0.20Down
Midgut1 ± 00 of 4 0.00Down
Tubule3 ± 00 of 4 0.10Down
Hindgut4 ± 00 of 4 0.10Down
Heart2 ± 10 of 4 0.04Down
Fat body5 ± 30 of 4 0.10Down
Ovary1 ± 00 of 4 0.00Down
Testis2 ± 10 of 4 0.10Down
Male accessory glands5 ± 30 of 4 0.10Down
Virgin spermatheca8 ± 10 of 4 0.16Down
Mated spermatheca7 ± 20 of 4 0.13Down
Adult carcass23 ± 71 of 4 0.40Down
Larval CNS419 ± 744 of 4 7.53Up
Larval Salivary gland3 ± 10 of 4 0.07Down
Larval midgut2 ± 00 of 4 0.04Down
Larval tubule2 ± 00 of 4 0.00Down
Larval hindgut0 ± 00 of 4 0.01Down
Larval fat body1 ± 00 of 4 0.00Down
Larval trachea5 ± 00 of 4 0.10Down
Larval carcass2 ± 00 of 4 0.05Down
S2 cells (growing)1 ± 00 of 4 0.03Down
Whole fly55 ± 44 of 4

Looking for FBgn0030258. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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