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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030260 through 18771 annotations produced 1 hits



(CG1537):

Annotation Number : CG1537
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030260
Gbrowse : chrX:10956053-10957118 (-) // 100.0 //
Probeset : 1640586_at
Accessions : protein= NP_572678;, nucleotide= NM_132450;
FlyMine data for FBgn0030260.
BDGP gene expression has embryonic in situ data for CG1537: 4 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0030260 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain212 ± 24 of 434.50Up
Head65 ± 64 of 410.60Up
Eye28 ± 14 of 4 4.67Up
Thoracicoabdominal ganglion350 ± 54 of 456.90Up
Salivary gland8 ± 20 of 4 1.39None
Crop254 ± 134 of 441.30Up
Midgut8 ± 30 of 4 1.30None
Tubule3 ± 00 of 4 0.60Down
Hindgut24 ± 24 of 4 4.00Up
Heart39 ± 34 of 4 6.46Up
Fat body4 ± 40 of 4 0.70None
Ovary1 ± 00 of 4 0.20Down
Testis1 ± 00 of 4 0.20Down
Male accessory glands5 ± 10 of 4 0.80None
Virgin spermatheca0 ± 00 of 4 0.11Down
Mated spermatheca1 ± 00 of 4 0.15Down
Adult carcass1 ± 00 of 4 0.20Down
Larval CNS257 ± 454 of 441.94Up
Larval Salivary gland1 ± 00 of 4 0.17Down
Larval midgut2 ± 00 of 4 0.38Down
Larval tubule3 ± 10 of 4 0.50None
Larval hindgut19 ± 33 of 4 3.15Up
Larval fat body2 ± 00 of 4 0.40Down
Larval trachea3 ± 20 of 4 0.59None
Larval carcass9 ± 31 of 4 1.52None
S2 cells (growing)1 ± 00 of 4 0.17Down
Whole fly6 ± 11 of 4

Looking for FBgn0030260. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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