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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0030262 through 18771 annotations produced 1 hits

Vago (Vago):

Annotation Number : CG2081
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030262
Gbrowse : chrX:10983322-10984143 (+) // 100.0 //
Probeset : 1639476_at
Accessions : protein= NP_001033840; /// NP_572680;, nucleotide= NM_001038751; /// NM_132452;
FlyMine data for FBgn0030262.
VDRC has 2 RNAi stocks for FBgn0030262 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain9 00 of 4 0.10Down
Head354 74 of 4 4.20Up
Eye136 254 of 4 1.62None
Thoracicoabdominal ganglion6 10 of 4 0.10Down
Salivary gland2 00 of 4 0.03Down
Crop859 474 of 410.20Up
Midgut3 00 of 4 0.00Down
Tubule6 10 of 4 0.10Down
Hindgut77 44 of 4 0.90None
Heart358 234 of 4 4.24Up
Fat body596 1934 of 4 7.06Up
Ovary0 00 of 4 0.00Down
Testis0 00 of 4 0.00Down
Male accessory glands7 20 of 4 0.10Down
Virgin spermatheca280 464 of 4 3.32Up
Mated spermatheca732 1804 of 4 8.67Up
Adult carcass294 374 of 4 3.50Up
Larval CNS5 10 of 4 0.07Down
Larval Salivary gland30 54 of 4 0.37Down
Larval midgut27 13 of 4 0.32Down
Larval tubule10 11 of 4 0.10Down
Larval hindgut100 54 of 4 1.19None
Larval fat body3145 3464 of 437.30Up
Larval trachea23 102 of 4 0.28Down
Larval carcass20 30 of 4 0.24Down
S2 cells (growing)8 00 of 4 0.11Down
Whole fly84 44 of 4

Looking for FBgn0030262. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime