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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030263 through 18771 annotations produced 1 hits



(CG2076):

Annotation Number : CG2076
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030263
Gbrowse : chrX:10984413-10986127 (+) // 100.0 //
Probeset : 1640185_at
Accessions : protein= NP_572681;, nucleotide= NM_132453;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
FlyMine data for FBgn0030263.
BDGP gene expression has embryonic in situ data for CG2076: 4 pix of staining in 1 body parts.
BioGrid reports that CG2076 interacts with CG8228 .
VDRC has 2 RNAi stocks for FBgn0030263 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain413 ± 54 of 4 1.20Up
Head423 ± 114 of 4 1.20Up
Eye501 ± 124 of 4 1.42Up
Thoracicoabdominal ganglion481 ± 134 of 4 1.40Up
Salivary gland552 ± 254 of 4 1.56Up
Crop463 ± 124 of 4 1.30Up
Midgut572 ± 124 of 4 1.60Up
Tubule872 ± 1084 of 4 2.50Up
Hindgut415 ± 214 of 4 1.20None
Heart714 ± 474 of 4 2.02Up
Fat body338 ± 304 of 4 0.96None
Ovary226 ± 94 of 4 0.60Down
Testis273 ± 44 of 4 0.80Down
Male accessory glands254 ± 154 of 4 0.70Down
Virgin spermatheca539 ± 224 of 4 1.52Up
Mated spermatheca559 ± 294 of 4 1.58Up
Adult carcass670 ± 314 of 4 1.90Up
Larval CNS351 ± 174 of 4 0.99None
Larval Salivary gland388 ± 154 of 4 1.10None
Larval midgut515 ± 74 of 4 1.46Up
Larval tubule640 ± 1004 of 4 1.80None
Larval hindgut408 ± 274 of 4 1.16None
Larval fat body277 ± 224 of 4 0.80Down
Larval trachea292 ± 234 of 4 0.83None
Larval carcass514 ± 404 of 4 1.45Up
S2 cells (growing)583 ± 214 of 4 1.65Up
Whole fly353 ± 204 of 4

Looking for FBgn0030263. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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