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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030268 through 18771 annotations produced 1 hits



Klp10A (Klp10A):

Annotation Number : CG1453
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030268
Gbrowse : chrX:11024528-11031056 (-) // 100.0 //
Probeset : 1634393_s_at
Accessions : protein= NP_572687; /// NP_727491; /// NP_727492; /// NP_727493; /// NP_727494;, nucleotide= NM_132459; /// NM_167267; /// NM_167268; /// NM_167269; /// NM_167270;
Pathway : "0000775 // chromosome
Interpro : centromeric region // inferred from electronic annotation /// 0000922 // spindle pole // inferred from direct assay ///
FlyMine data for FBgn0030268.
Homophila reports that CG1453 is a close match (4e-32) to human gene KIF5A;NKHC;SPG10 (NP_004975), a gene associated with Spastic paraplegia 10, 604187 (3).
TRiP has 1 RNAi stocks for FBgn0030268 available for purchase.
VDRC has 1 RNAi stocks for FBgn0030268 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain109 ± 44 of 4 0.50Down
Head42 ± 114 of 4 0.20Down
Eye51 ± 104 of 4 0.22Down
Thoracicoabdominal ganglion74 ± 114 of 4 0.30Down
Salivary gland39 ± 94 of 4 0.17Down
Crop56 ± 24 of 4 0.20Down
Midgut50 ± 24 of 4 0.20Down
Tubule46 ± 53 of 4 0.20Down
Hindgut52 ± 14 of 4 0.20Down
Heart44 ± 34 of 4 0.19Down
Fat body37 ± 24 of 4 0.16Down
Ovary465 ± 114 of 4 2.00Up
Testis717 ± 374 of 4 3.10Up
Male accessory glands26 ± 23 of 4 0.10Down
Virgin spermatheca32 ± 13 of 4 0.14Down
Mated spermatheca27 ± 13 of 4 0.12Down
Adult carcass42 ± 44 of 4 0.20Down
Larval CNS138 ± 164 of 4 0.59Down
Larval Salivary gland82 ± 54 of 4 0.35Down
Larval midgut43 ± 34 of 4 0.18Down
Larval tubule55 ± 24 of 4 0.20Down
Larval hindgut52 ± 14 of 4 0.22Down
Larval fat body109 ± 324 of 4 0.50Down
Larval trachea115 ± 134 of 4 0.49Down
Larval carcass76 ± 104 of 4 0.33Down
S2 cells (growing)260 ± 54 of 4 1.11None
Whole fly233 ± 114 of 4

Looking for FBgn0030268. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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