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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0030269 through 18771 annotations produced 1 hits


Annotation Number : CG18292
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030269
Gbrowse : chrX:11031914-11033726 (+) // 100.0 //
Probeset : 1627421_at
Accessions : protein= NP_572688;, nucleotide= NM_132460;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0030269.
BioGrid reports that CG18292 interacts with CG7760 CG8103 CG31666 CG4651 CG4998 CG7659 CG8580 CG8924 CG9071 .
VDRC has 1 RNAi stocks for FBgn0030269 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain193 104 of 4 0.80Down
Head139 144 of 4 0.60Down
Eye189 34 of 4 0.77Down
Thoracicoabdominal ganglion164 124 of 4 0.70Down
Salivary gland212 194 of 4 0.86None
Crop310 114 of 4 1.30Up
Midgut187 14 of 4 0.80Down
Tubule129 54 of 4 0.50Down
Hindgut219 44 of 4 0.90Down
Heart233 164 of 4 0.94None
Fat body89 164 of 4 0.36Down
Ovary529 144 of 4 2.10Up
Testis19 14 of 4 0.10Down
Male accessory glands64 14 of 4 0.30Down
Virgin spermatheca232 104 of 4 0.94None
Mated spermatheca283 144 of 4 1.14None
Adult carcass108 94 of 4 0.40Down
Larval CNS408 394 of 4 1.65Up
Larval Salivary gland382 124 of 4 1.55Up
Larval midgut162 84 of 4 0.66Down
Larval tubule350 84 of 4 1.40Up
Larval hindgut285 174 of 4 1.16None
Larval fat body158 114 of 4 0.60Down
Larval trachea405 194 of 4 1.64Up
Larval carcass214 84 of 4 0.87Down
S2 cells (growing)251 64 of 4 1.02None
Whole fly247 74 of 4

Looking for FBgn0030269. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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