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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0030270 through 18771 annotations produced 1 hits


Annotation Number : CG15199
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030270
Gbrowse : chrX:11034652-11035064 (-) // 100.0 //
Probeset : 1623687_at
Accessions : protein= NP_572689;, nucleotide= NM_132461;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0030270.
BioGrid reports that CG15199 interacts with CG7409 .
VDRC has 3 RNAi stocks for FBgn0030270 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain8 22 of 4 0.10Down
Head63 34 of 4 0.40None
Eye70 164 of 4 0.42None
Thoracicoabdominal ganglion17 24 of 4 0.10Down
Salivary gland20 30 of 4 0.12Down
Crop17 32 of 4 0.10Down
Midgut2379 1994 of 414.20Up
Tubule14 11 of 4 0.10Down
Hindgut16 23 of 4 0.10Down
Heart250 194 of 4 1.49None
Fat body458 1604 of 4 2.73Up
Ovary2 00 of 4 0.00Down
Testis6 10 of 4 0.00Down
Male accessory glands64 44 of 4 0.40None
Virgin spermatheca406 414 of 4 2.42Up
Mated spermatheca296 204 of 4 1.77Up
Adult carcass227 184 of 4 1.40None
Larval CNS4 20 of 4 0.03Down
Larval Salivary gland18 10 of 4 0.11Down
Larval midgut7 20 of 4 0.04Down
Larval tubule12 20 of 4 0.10Down
Larval hindgut16 14 of 4 0.10Down
Larval fat body69 74 of 4 0.40None
Larval trachea7 61 of 4 0.04Down
Larval carcass6 10 of 4 0.04Down
S2 cells (growing)5 10 of 4 0.03Down
Whole fly167 354 of 4

Looking for FBgn0030270. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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