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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030274 through 18771 annotations produced 1 hits



(CG1908):

Annotation Number : CG1908
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030274
Gbrowse : chrX:11043481-11046625 (+) // 100.0 //
Probeset : 1638112_at
Accessions : protein= NP_572692;, nucleotide= NM_132464;
Interpro : 0008270 // zinc ion binding // inferred from electronic annotation
FlyMine data for FBgn0030274.
BDGP gene expression has embryonic in situ data for CG1908: 4 pix of staining in 1 body parts.
TRiP has 1 RNAi stocks for FBgn0030274 available for purchase.
VDRC has 3 RNAi stocks for FBgn0030274 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain157 ± 74 of 4 0.90None
Head109 ± 114 of 4 0.60Down
Eye99 ± 34 of 4 0.55Down
Thoracicoabdominal ganglion148 ± 44 of 4 0.80Down
Salivary gland127 ± 84 of 4 0.71Down
Crop127 ± 24 of 4 0.70Down
Midgut79 ± 24 of 4 0.40Down
Tubule127 ± 74 of 4 0.70Down
Hindgut116 ± 64 of 4 0.60Down
Heart70 ± 114 of 4 0.40Down
Fat body91 ± 94 of 4 0.51Down
Ovary357 ± 34 of 4 2.00Up
Testis283 ± 74 of 4 1.60Up
Male accessory glands133 ± 64 of 4 0.70Down
Virgin spermatheca135 ± 64 of 4 0.75Down
Mated spermatheca137 ± 124 of 4 0.77Down
Adult carcass125 ± 74 of 4 0.70Down
Larval CNS146 ± 154 of 4 0.82Down
Larval Salivary gland89 ± 44 of 4 0.50Down
Larval midgut107 ± 154 of 4 0.60Down
Larval tubule216 ± 94 of 4 1.20Up
Larval hindgut151 ± 94 of 4 0.85None
Larval fat body230 ± 274 of 4 1.30None
Larval trachea184 ± 164 of 4 1.03None
Larval carcass153 ± 214 of 4 0.86None
S2 cells (growing)97 ± 104 of 4 0.55Down
Whole fly179 ± 84 of 4

Looking for FBgn0030274. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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