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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030278 through 18771 annotations produced 1 hits



(CG15200):

Annotation Number : CG15200
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030278
Gbrowse : chrX:11076963-11077520 (+) // 100.0 //
Probeset : 1628874_at
Accessions : protein= NP_572697;, nucleotide= NM_132469;
FlyMine data for FBgn0030278.
BioGrid reports that CG15200 interacts with CG15482 .
VDRC has 2 RNAi stocks for FBgn0030278 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 11 of 4 0.00Down
Head2 ± 10 of 4 0.00Down
Eye4 ± 21 of 4 0.03Down
Thoracicoabdominal ganglion4 ± 10 of 4 0.00Down
Salivary gland15 ± 11 of 4 0.10Down
Crop6 ± 20 of 4 0.00Down
Midgut1 ± 00 of 4 0.00Down
Tubule5 ± 00 of 4 0.00Down
Hindgut4 ± 10 of 4 0.00Down
Heart0 ± 00 of 4 0.01Down
Fat body7 ± 21 of 4 0.05Down
Ovary1 ± 00 of 4 0.00Down
Testis1635 ± 824 of 410.40Up
Male accessory glands6 ± 11 of 4 0.00Down
Virgin spermatheca9 ± 13 of 4 0.06Down
Mated spermatheca10 ± 33 of 4 0.07Down
Adult carcass12 ± 33 of 4 0.10Down
Larval CNS1 ± 00 of 4 0.01Down
Larval Salivary gland2 ± 10 of 4 0.02Down
Larval midgut5 ± 10 of 4 0.04Down
Larval tubule6 ± 11 of 4 0.00Down
Larval hindgut2 ± 11 of 4 0.01Down
Larval fat body160 ± 804 of 4 1.00None
Larval trachea11 ± 122 of 4 0.07Down
Larval carcass8 ± 01 of 4 0.05Down
S2 cells (growing)0 ± 00 of 4 0.01Down
Whole fly157 ± 164 of 4

Looking for FBgn0030278. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime