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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030280 through 18771 annotations produced 1 hits



(CG11106):

Annotation Number : CG11106
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030280
Gbrowse : chrX:11096301-11096840 (+) // 100.0 //
Probeset : 1640086_at
Accessions : protein= NP_572698;, nucleotide= NM_132470;
FlyMine data for FBgn0030280.
BDGP gene expression has embryonic in situ data for CG11106: 2 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0030280 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 00 of 4 0.00Down
Head3 ± 11 of 4 0.00Down
Eye5 ± 11 of 4 0.02Down
Thoracicoabdominal ganglion5 ± 21 of 4 0.00Down
Salivary gland11 ± 41 of 4 0.05Down
Crop6 ± 02 of 4 0.00Down
Midgut3 ± 10 of 4 0.00Down
Tubule3 ± 00 of 4 0.00Down
Hindgut3 ± 10 of 4 0.00Down
Heart2 ± 10 of 4 0.01Down
Fat body4 ± 11 of 4 0.02Down
Ovary2 ± 00 of 4 0.00Down
Testis2028 ± 74 of 4 8.10Up
Male accessory glands9 ± 11 of 4 0.00Down
Virgin spermatheca9 ± 10 of 4 0.04Down
Mated spermatheca6 ± 11 of 4 0.03Down
Adult carcass13 ± 31 of 4 0.10Down
Larval CNS2 ± 11 of 4 0.01Down
Larval Salivary gland6 ± 11 of 4 0.02Down
Larval midgut5 ± 10 of 4 0.02Down
Larval tubule2 ± 00 of 4 0.00Down
Larval hindgut3 ± 10 of 4 0.02Down
Larval fat body294 ± 1274 of 4 1.20None
Larval trachea9 ± 141 of 4 0.04Down
Larval carcass4 ± 11 of 4 0.02Down
S2 cells (growing)2 ± 00 of 4 0.01Down
Whole fly249 ± 264 of 4

Looking for FBgn0030280. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime