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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030286 through 18771 annotations produced 1 hits



(CG1657):

Annotation Number : CG1657
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030286
Gbrowse : chrX:11219494-11228107 (+) // 100.0 //
Probeset : 1626575_at
Accessions : protein= NP_572704;, nucleotide= NM_132476;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005829 // cytosol // inferred from sequence or stru
Interpro : 0005085 // guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005085 // guanyl-nucle
FlyMine data for FBgn0030286.
TRiP has 1 RNAi stocks for FBgn0030286 available for purchase.
VDRC has 2 RNAi stocks for FBgn0030286 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain354 54 of 4 3.50Up
Head144 64 of 4 1.40Up
Eye243 154 of 4 2.40Up
Thoracicoabdominal ganglion262 24 of 4 2.60Up
Salivary gland179 54 of 4 1.78Up
Crop58 04 of 4 0.60Down
Midgut64 14 of 4 0.60Down
Tubule157 34 of 4 1.60Up
Hindgut121 34 of 4 1.20Up
Heart131 54 of 4 1.30Up
Fat body81 94 of 4 0.80Down
Ovary173 54 of 4 1.70Up
Testis28 24 of 4 0.30Down
Male accessory glands192 64 of 4 1.90Up
Virgin spermatheca54 44 of 4 0.54Down
Mated spermatheca61 24 of 4 0.61Down
Adult carcass145 94 of 4 1.40Up
Larval CNS97 104 of 4 0.96None
Larval Salivary gland20 14 of 4 0.21Down
Larval midgut82 24 of 4 0.81Down
Larval tubule91 54 of 4 0.90None
Larval hindgut67 54 of 4 0.67Down
Larval fat body25 24 of 4 0.30Down
Larval trachea60 94 of 4 0.60Down
Larval carcass28 44 of 4 0.29Down
S2 cells (growing)102 14 of 4 1.02None
Whole fly101 64 of 4

Looking for FBgn0030286. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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