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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030291 through 18771 annotations produced 1 hits



(CG1738):

Annotation Number : CG1738
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030291
Gbrowse : chrX:11243086-11243881 (+) // 100.0 //
Probeset : 1625320_at
Accessions : protein= NP_572709;, nucleotide= NM_132481;
FlyMine data for FBgn0030291.
BDGP gene expression has embryonic in situ data for CG1738: 8 pix of staining in 1 body parts.
VDRC has 3 RNAi stocks for FBgn0030291 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain54 ± 14 of 4 0.60Down
Head31 ± 24 of 4 0.40Down
Eye17 ± 04 of 4 0.20Down
Thoracicoabdominal ganglion45 ± 14 of 4 0.50Down
Salivary gland30 ± 31 of 4 0.35Down
Crop25 ± 12 of 4 0.30Down
Midgut28 ± 21 of 4 0.30Down
Tubule11 ± 10 of 4 0.10Down
Hindgut28 ± 13 of 4 0.30Down
Heart17 ± 24 of 4 0.20Down
Fat body25 ± 42 of 4 0.29Down
Ovary227 ± 54 of 4 2.60Up
Testis35 ± 24 of 4 0.40Down
Male accessory glands46 ± 54 of 4 0.50Down
Virgin spermatheca17 ± 11 of 4 0.21Down
Mated spermatheca22 ± 24 of 4 0.26Down
Adult carcass18 ± 20 of 4 0.20Down
Larval CNS85 ± 84 of 4 0.99None
Larval Salivary gland25 ± 23 of 4 0.29Down
Larval midgut15 ± 11 of 4 0.17Down
Larval tubule18 ± 30 of 4 0.20Down
Larval hindgut21 ± 24 of 4 0.25Down
Larval fat body28 ± 11 of 4 0.30Down
Larval trachea40 ± 44 of 4 0.47Down
Larval carcass32 ± 54 of 4 0.38Down
S2 cells (growing)61 ± 24 of 4 0.72Down
Whole fly86 ± 54 of 4

Looking for FBgn0030291. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime