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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030292 through 18771 annotations produced 1 hits



(CG11752):

Annotation Number : CG11752
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030292
Gbrowse : chrX:11244031-11244522 (+) // 98.99 //
Probeset : 1626885_at
Accessions : protein= NP_572710;, nucleotide= NM_132482;
FlyMine data for FBgn0030292.
VDRC has 2 RNAi stocks for FBgn0030292 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain544 ± 114 of 4 1.30Up
Head583 ± 364 of 4 1.40Up
Eye778 ± 474 of 4 1.84Up
Thoracicoabdominal ganglion732 ± 254 of 4 1.70Up
Salivary gland948 ± 334 of 4 2.24Up
Crop454 ± 234 of 4 1.10None
Midgut451 ± 144 of 4 1.10None
Tubule238 ± 114 of 4 0.60Down
Hindgut833 ± 224 of 4 2.00Up
Heart504 ± 54 of 4 1.19None
Fat body588 ± 664 of 4 1.39Up
Ovary217 ± 54 of 4 0.50Down
Testis48 ± 54 of 4 0.10Down
Male accessory glands497 ± 164 of 4 1.20None
Virgin spermatheca399 ± 354 of 4 0.94None
Mated spermatheca349 ± 164 of 4 0.82None
Adult carcass1083 ± 474 of 4 2.60Up
Larval CNS348 ± 394 of 4 0.82None
Larval Salivary gland1027 ± 454 of 4 2.42Up
Larval midgut427 ± 134 of 4 1.01None
Larval tubule373 ± 194 of 4 0.90None
Larval hindgut794 ± 204 of 4 1.88Up
Larval fat body227 ± 304 of 4 0.50Down
Larval trachea322 ± 214 of 4 0.76Down
Larval carcass596 ± 394 of 4 1.41Up
S2 cells (growing)303 ± 34 of 4 0.72Down
Whole fly423 ± 264 of 4

Looking for FBgn0030292. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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