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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030294 through 18771 annotations produced 1 hits



(CG11750):

Annotation Number : CG11750
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030294
Gbrowse : chrX:11253269-11254965 (+) // 99.76 //
Probeset : 1634549_at
Accessions : protein= NP_572712;, nucleotide= NM_132484;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0030294.
BDGP gene expression has embryonic in situ data for CG11750: 8 pix of staining in 1 body parts.
BioGrid reports that CG11750 interacts with CG32133 .
VDRC has 3 RNAi stocks for FBgn0030294 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain215 ± 124 of 4 1.20None
Head102 ± 74 of 4 0.60Down
Eye115 ± 124 of 4 0.65Down
Thoracicoabdominal ganglion159 ± 44 of 4 0.90None
Salivary gland61 ± 84 of 4 0.35Down
Crop141 ± 144 of 4 0.80None
Midgut101 ± 24 of 4 0.60Down
Tubule72 ± 124 of 4 0.40Down
Hindgut72 ± 64 of 4 0.40Down
Heart66 ± 34 of 4 0.38Down
Fat body117 ± 134 of 4 0.66Down
Ovary606 ± 124 of 4 3.40Up
Testis16 ± 14 of 4 0.10Down
Male accessory glands121 ± 44 of 4 0.70Down
Virgin spermatheca111 ± 54 of 4 0.63Down
Mated spermatheca107 ± 124 of 4 0.61Down
Adult carcass48 ± 14 of 4 0.30Down
Larval CNS499 ± 614 of 4 2.81Up
Larval Salivary gland124 ± 164 of 4 0.70None
Larval midgut141 ± 54 of 4 0.79None
Larval tubule85 ± 84 of 4 0.50Down
Larval hindgut139 ± 44 of 4 0.79None
Larval fat body101 ± 104 of 4 0.60Down
Larval trachea129 ± 114 of 4 0.73Down
Larval carcass118 ± 64 of 4 0.67Down
S2 cells (growing)218 ± 164 of 4 1.23None
Whole fly177 ± 134 of 4

Looking for FBgn0030294. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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