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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030298 through 18771 annotations produced 1 hits



Odorant receptor 10a (Or10a):

Annotation Number : CG17867
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030298
Gbrowse : chrX:11309921-11311436 (-) // 100.0 //
Probeset : 1632950_at
Accessions : protein= NP_511122;, nucleotide= NM_078567;
Pathway : 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic an
Interpro : 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferre
FlyMine data for FBgn0030298.
VDRC has 2 RNAi stocks for FBgn0030298 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.90None
Head1 00 of 4 1.00None
Eye4 00 of 4 3.12Up
Thoracicoabdominal ganglion1 00 of 4 1.10None
Salivary gland2 00 of 4 1.39None
Crop5 00 of 4 3.70Up
Midgut1 00 of 4 0.70None
Tubule3 00 of 4 2.70Up
Hindgut1 00 of 4 1.10None
Heart0 00 of 4 0.61None
Fat body3 20 of 4 2.09None
Ovary0 00 of 4 0.40None
Testis3 10 of 4 2.50None
Male accessory glands3 10 of 4 2.20None
Virgin spermatheca2 00 of 4 1.84None
Mated spermatheca4 20 of 4 3.18None
Adult carcass5 20 of 4 3.50None
Larval CNS4 11 of 4 3.30Up
Larval Salivary gland3 10 of 4 2.58None
Larval midgut8 00 of 4 5.74Up
Larval tubule3 10 of 4 2.60None
Larval hindgut2 10 of 4 1.84None
Larval fat body3 10 of 4 2.70None
Larval trachea10 02 of 4 7.63Up
Larval carcass4 10 of 4 3.16None
S2 cells (growing)2 00 of 4 1.84None
Whole fly1 00 of 4

Looking for FBgn0030298. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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