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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0030304 through 18771 annotations produced 1 hits

Cyp4g15 (Cyp4g15):

Annotation Number : CG11715
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030304
Gbrowse : chrX:11371113-11377138 (+) // 100.0 //
Probeset : 1635727_a_at
Accessions : protein= NP_572721; /// NP_727531;, nucleotide= NM_132493; /// NM_167287;
Pathway : 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane //
Interpro : 0004497 // monooxygenase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred fro
FlyMine data for FBgn0030304.
BDGP gene expression has embryonic in situ data for Cyp4g15: 12 pix of staining in 3 body parts.
Homophila reports that CG11715 is a close match (9e-11) to human gene CYP5;GHOSAL;TBXAS1 (NP_112246), a gene associated with Ghosal syndrome, 231095 (3);Thromboxane synthase deficiency (2).
TRiP has 1 RNAi stocks for FBgn0030304 available for purchase.
VDRC has 2 RNAi stocks for FBgn0030304 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain733 164 of 415.90Up
Head556 184 of 412.00Up
Eye686 104 of 414.88Up
Thoracicoabdominal ganglion1452 384 of 431.50Up
Salivary gland33 43 of 4 0.73None
Crop27 34 of 4 0.60Down
Midgut33 14 of 4 0.70Down
Tubule38 14 of 4 0.80Down
Hindgut85 24 of 4 1.90Up
Heart45 24 of 4 0.99None
Fat body72 124 of 4 1.57Up
Ovary7 02 of 4 0.20Down
Testis13 04 of 4 0.30Down
Male accessory glands98 34 of 4 2.10Up
Virgin spermatheca26 54 of 4 0.56Down
Mated spermatheca30 24 of 4 0.66Down
Adult carcass112 84 of 4 2.40Up
Larval CNS559 494 of 412.11Up
Larval Salivary gland3 10 of 4 0.07Down
Larval midgut5 11 of 4 0.12Down
Larval tubule4 02 of 4 0.10Down
Larval hindgut8 21 of 4 0.19Down
Larval fat body5 20 of 4 0.10Down
Larval trachea14 221 of 4 0.30None
Larval carcass5 10 of 4 0.13Down
S2 cells (growing)2 11 of 4 0.06Down
Whole fly46 34 of 4

Looking for FBgn0030304. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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