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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030306 through 18771 annotations produced 1 hits



Spase 25-subunit (Spase25):

Annotation Number : CG1751
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030306
Gbrowse : chrX:11379316-11380302 (+) // 100.0 //
Probeset : 1637839_at
Accessions : protein= NP_572723;, nucleotide= NM_132495;
Pathway : 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005787 // signal peptidase complex // infer
Interpro : 0008233 // peptidase activity // inferred from sequence or structural similarity /// 0008233 // peptidase activity // no
FlyMine data for FBgn0030306.
BDGP gene expression has embryonic in situ data for CG1751: 27 pix of staining in 12 body parts.
VDRC has 2 RNAi stocks for FBgn0030306 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain185 ± 94 of 4 0.40Down
Head365 ± 94 of 4 0.90None
Eye275 ± 104 of 4 0.65Down
Thoracicoabdominal ganglion217 ± 84 of 4 0.50Down
Salivary gland5657 ± 1014 of 413.29Up
Crop338 ± 204 of 4 0.80Down
Midgut570 ± 94 of 4 1.30Up
Tubule209 ± 344 of 4 0.50Down
Hindgut265 ± 44 of 4 0.60Down
Heart334 ± 84 of 4 0.79Down
Fat body451 ± 744 of 4 1.06None
Ovary394 ± 114 of 4 0.90None
Testis154 ± 64 of 4 0.40Down
Male accessory glands4451 ± 944 of 410.50Up
Virgin spermatheca648 ± 84 of 4 1.52Up
Mated spermatheca688 ± 894 of 4 1.62None
Adult carcass325 ± 254 of 4 0.80Down
Larval CNS466 ± 194 of 4 1.10None
Larval Salivary gland4349 ± 1684 of 410.22Up
Larval midgut403 ± 144 of 4 0.95None
Larval tubule778 ± 124 of 4 1.80Up
Larval hindgut383 ± 124 of 4 0.90None
Larval fat body995 ± 1144 of 4 2.30Up
Larval trachea772 ± 1294 of 4 1.81Up
Larval carcass651 ± 414 of 4 1.53Up
S2 cells (growing)706 ± 114 of 4 1.66Up
Whole fly425 ± 264 of 4

Looking for FBgn0030306. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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