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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030307 through 18771 annotations produced 1 hits



(CG33235):

Annotation Number : CG33235
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030307
Gbrowse : chrX:11380801-11385556 (-) // 100.0 // /// chrX:11381808-11385143 (-) // 52.41 //
Probeset : 1634775_at
Accessions : protein= NP_996410;, nucleotide= NM_206687;
FlyMine data for FBgn0030307.
BDGP gene expression has embryonic in situ data for CG33235: 4 pix of staining in 1 body parts.
VDRC has 4 RNAi stocks for FBgn0030307 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 10 of 4 0.60None
Head3 10 of 4 0.40None
Eye2 00 of 4 0.29None
Thoracicoabdominal ganglion2 10 of 4 0.30None
Salivary gland17 60 of 4 2.21None
Crop5 21 of 4 0.70None
Midgut3 10 of 4 0.40None
Tubule4 00 of 4 0.60Down
Hindgut4 10 of 4 0.50None
Heart2 00 of 4 0.25None
Fat body2 10 of 4 0.30None
Ovary2 00 of 4 0.30None
Testis149 104 of 418.40Up
Male accessory glands9 10 of 4 1.20None
Virgin spermatheca11 22 of 4 1.40None
Mated spermatheca9 31 of 4 1.13None
Adult carcass5 30 of 4 0.70None
Larval CNS5 10 of 4 0.63None
Larval Salivary gland3 10 of 4 0.38None
Larval midgut3 20 of 4 0.42None
Larval tubule5 10 of 4 0.70None
Larval hindgut2 00 of 4 0.28None
Larval fat body13 61 of 4 1.60None
Larval trachea1 00 of 4 0.15None
Larval carcass1 00 of 4 0.18None
S2 cells (growing)3 10 of 4 0.45None
Whole fly8 20 of 4

Looking for FBgn0030307. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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